RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 ATXN8OSP0DMR3 200 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 MMP11P24347 488 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 PCGF2P35227 344 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 PGDP52209 483 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 CORO7P57737 925 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 MRPS35P82673 323 aaKnown RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 DMTNQ08495 405 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 MGAT2Q10469 447 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 ZNF155Q12901 538 aaPredicted RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 KCNAB2Q13303 367 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 SSPNQ14714 243 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 LASP1Q14847 261 aaKnown RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 EXT1Q16394 746 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 FXNQ16595 210 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 SFT2D3Q587I9 215 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.85□□□□□ -0.99
YBX3-215ENST00000544504 PRAMEF8Q5VWM4 474 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 PRAMEF7Q5VXH5 474 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 MFSD12Q6NUT3 480 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 BORAQ6PGQ7 559 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 FAM111BQ6SJ93 734 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 RNF111Q6ZNA4 994 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 SLC29A4Q7RTT9 530 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 TIPARPQ7Z3E1 657 aaKnown RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 LAPTM4BQ86VI4 370 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 DHFR2Q86XF0 187 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 RAB43Q86YS6 212 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 HPS6Q86YV9 775 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 IL22RA1Q8N6P7 574 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 RNF148Q8N7C7 305 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 GOLM1Q8NBJ4 401 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 PMM1Q92871 262 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 TSLPQ969D9 159 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 PPWD1Q96BP3 646 aaKnown RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 CCDC124Q96CT7 223 aaKnown RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 SENP5Q96HI0 755 aaPredicted RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 RNF145Q96MT1 663 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 STACQ99469 402 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 CNPPD1Q9BV87 410 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 IKZF5Q9H5V7 419 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 TRIM45Q9H8W5 580 aaPredicted RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 CACYBPQ9HB71 228 aaKnown RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 A4GALTQ9NPC4 353 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 DUSP22Q9NRW4 184 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 GPATCH2Q9NW75 528 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 ACTR3BQ9P1U1 418 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 P2RX2Q9UBL9 471 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 SLC7A8Q9UHI5 535 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 TCFL5Q9UL49 500 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 PPIEQ9UNP9 301 aaKnown RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 ERVK-11Q9UQG0 969 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 ERVK-19Q9WJR5 959 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 POMPQ9Y244 141 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 ANGPT4Q9Y264 503 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 RRP15Q9Y3B9 282 aaKnown RBP8.85□□□□□ -0.99
YBX3-215ENST00000544504 PCDHGA6Q9Y5G7 932 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 FER1L5A0AVI2 2057 aa8.85□□□□□ -0.99
YBX3-215ENST00000544504 A0A1W2PQ72 361 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 SAGE2PA6NJ88 616 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 CNOT3O75175 753 aaKnown RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 TNFRSF21O75509 655 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 KLF7O75840 302 aaPredicted RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 PDE9AO76083 593 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 CBX7O95931 251 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 ARAFP10398 606 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 NR2F1P10589 423 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 ICAM2P13598 275 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 ETFAP13804 333 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 TCN1P20061 433 aaPredicted RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 S1PR1P21453 382 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 DLSTP36957 453 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 GZMMP51124 257 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 MVDP53602 400 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 POLE2P56282 527 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 RIPPLY3P57055 190 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 HPCAP84074 193 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 ELOAQ14241 798 aaKnown RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 SELPLGQ14242 412 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 FLOT2Q14254 428 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 MYBPC3Q14896 1274 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 VMACQ2NL98 169 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 TRMT12Q53H54 448 aaKnown RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 HLA-DQA1Q5Y7H0 255 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 HIST2H2BCQ6DN03 193 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 LCN10Q6JVE6 187 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 REEP3Q6NUK4 255 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 TNFAIP8L2Q6P589 184 aaPredicted RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 FAM199XQ6PEV8 388 aaPredicted RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 PAPD4Q6PIY7 484 aaKnown RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 SHISA6Q6ZSJ9 500 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 C16orf62Q7Z3J2 963 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 PATL1Q86TB9 770 aaKnown RBP8.84□□□□□ -0.99
YBX3-215ENST00000544504 KRT73Q86Y46 540 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 EID3Q8N140 333 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 HIPK4Q8NE63 616 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 C17orf47Q8NEP4 570 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 B3GNT7Q8NFL0 401 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 OR52R1Q8NGF1 315 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 OR52E4Q8NGH9 312 aa8.84□□□□□ -0.99
YBX3-215ENST00000544504 OR5L2Q8NGL0 311 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms