RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ARMCX4Q5H9R4 360 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 MFSD12Q6NUT3 480 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 FBXO42Q6P3S6 717 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 CCDC116Q8IYX3 515 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 TMCO5AQ8N6Q1 288 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 OR4E2Q8NGC2 313 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 OR4K5Q8NGD3 323 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 OR5D16Q8NGK9 328 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ADAMTS15Q8TE58 950 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 FGF11Q92914 225 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ERLEC1Q96DZ1 483 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 NRTNQ99748 197 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 RHNO1Q9BSD3 238 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 TEX12Q9BXU0 123 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 RSPO3Q9BXY4 272 aaPredicted RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 SAP130Q9H0E3 1048 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 FGF20Q9NP95 211 aaPredicted RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 GPR83Q9NYM4 423 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 AASSQ9UDR5 926 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 DAPP1Q9UN19 280 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 DIMT1Q9UNQ2 313 aaKnown RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 CFL2Q9Y281 166 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 KLHL20Q9Y2M5 609 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 LSM2Q9Y333 95 aaKnown RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 SLC22A7Q9Y694 548 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 TMEM131Q92545 1883 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 A0A0J9YY10 115 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 PPM1DO15297 605 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 EPPINO95925 133 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 GAAP10253 952 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 RPS4Y1P22090 263 aaKnown RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 PRKCDQ05655 676 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 MLLT11Q13015 90 aaPredicted RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 TARDBPQ13148 414 aaKnown RBP eCLIP9.25□□□□□ -0.932e-8■■□□□ 13.7
SS18-205ENST00000542420 DUSP8Q13202 625 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 NDUFA5Q16718 116 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 PRRT3Q5FWE3 981 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 ZNF311Q5JNZ3 666 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 C3orf38Q5JPI3 329 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 C18orf63Q68DL7 685 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 FIGLAQ6QHK4 219 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 TMEM107Q6UX40 140 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 SLC43A2Q8N370 569 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 OR6T1Q8NGN1 323 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 DIO2Q92813 273 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 HOXB13Q92826 284 aaPredicted RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 ZFYVE21Q9BQ24 234 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 DUSP22Q9NRW4 184 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 C19orf53Q9UNZ5 99 aaPredicted RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 PEX16Q9Y5Y5 336 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 PIAS3Q9Y6X2 628 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 PNMA8CA0A1B0GUJ8 204 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 PRR23AA6NEV1 266 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 CYP7B1O75881 506 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 SNX4O95219 450 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 RASGRP1O95267 797 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 PTHP01270 115 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 ATP1B1P05026 303 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 EIF2S1P05198 315 aaKnown RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 ZNF888P0CJ79 500 aaPredicted RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 MMP11P24347 488 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 GADD45AP24522 165 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 FPR3P25089 353 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 MAT2AP31153 395 aaKnown RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 IDUAP35475 653 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 SOX6P35712 828 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 GIPRP48546 466 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 TPMTP51580 245 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 NCS1P62166 190 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 KRR1Q13601 381 aaKnown RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 C1DQ13901 141 aaKnown RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 LARS2Q15031 903 aaKnown RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 OXA1LQ15070 435 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 ZNF181Q2M3W8 571 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 ALG11Q2TAA5 492 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 CYP27C1Q4G0S4 372 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 FCRL6Q6DN72 434 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 C16orf62Q7Z3J2 963 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 ZER1Q7Z7L7 766 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 CADM3Q8N126 398 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 CYP4Z2PQ8N1L4 340 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 OR9Q1Q8NGQ5 310 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 MCFD2Q8NI22 146 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 VANGL1Q8TAA9 524 aaPredicted RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 BAHD1Q8TBE0 780 aaPredicted RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 PIGXQ8TBF5 258 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 ADAMTS18Q8TE60 1221 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 ACOT11Q8WXI4 607 aaPredicted RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 UCN3Q969E3 161 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 OTUB1Q96FW1 271 aaPredicted RBP9.25□□□□□ -0.93
SS18-205ENST00000542420 MGLLQ99685 303 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 JAM3Q9BX67 310 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 DSN1Q9H410 356 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 PIGUQ9H490 435 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 SYNDIG1Q9H7V2 258 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 RHCGQ9UBD6 479 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 PMF1-BGLAPU3KQ54 211 aa9.25□□□□□ -0.93
SS18-205ENST00000542420 ATG2BQ96BY7 2078 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 A0A0G2JN53 185 aa9.24□□□□□ -0.93
SS18-205ENST00000542420 LOC105371267A0A1B0GV96 52 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms