RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 C18orf63Q68DL7 685 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 OR52E8Q6IFG1 317 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 MRM1Q6IN84 353 aaKnown RBP11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 FAM71E1Q6IPT2 247 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 ARSKQ6UWY0 536 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 PAMR1Q6UXH9 720 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 FAM98AQ8NCA5 519 aaKnown RBP11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 VPS37AQ8NEZ2 397 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 OR9I1Q8NGQ6 314 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 TBC1D20Q96BZ9 403 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 KLHL29Q96CT2 875 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 MTERF3Q96E29 417 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 CSF3RQ99062 836 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 VN1R1Q9GZP7 353 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 MYLK2Q9H1R3 596 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 RPF2Q9H7B2 306 aaKnown RBP11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 TRIM45Q9H8W5 580 aaPredicted RBP11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 EDARQ9UNE0 448 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 ATG4BQ9Y4P1 393 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 ASB4Q9Y574 426 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 ZNF780BQ9Y6R6 833 aa11.54□□□□□ -0.56
CLSTN3-208ENST00000538933 SONP18583 2426 aaKnown RBP11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 A0A1W2PR48 441 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 FAM234BA2RU67 622 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 CCDC154A6NI56 674 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 GLOD5A6NK44 160 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 C9JVG2 144 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 ANGPT2O15123 496 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 CFLARO15519 480 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 B4GALT2O60909 372 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 CDC123O75794 336 aaPredicted RBP11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 IL6P05231 212 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 PPP2R1BP30154 601 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 NTSP30990 170 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 MRPL19P49406 292 aaKnown RBP11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 SLC13A2Q13183 592 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 SNTB1Q13884 538 aaKnown RBP11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 CYLC2Q14093 348 aaPredicted RBP11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 FAM174BQ3ZCQ3 159 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 ANKRD26P1Q6NSI1 321 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 GK5Q6ZS86 529 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 CLNKQ7Z7G1 428 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 LIX1LQ8IVB5 337 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 NATD1Q8N6N6 113 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 HORMAD2Q8N7B1 307 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 M1APQ8TC57 530 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 EXOSC8Q96B26 276 aaKnown RBP11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 CMTM5Q96DZ9 223 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 SPDL1Q96EA4 605 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 BBS4Q96RK4 519 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 CCDC106Q9BWC9 280 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 ZNF385DQ9H6B1 395 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 RMND5AQ9H871 391 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 MMP25Q9NPA2 562 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 PRTFDC1Q9NRG1 225 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 TMEM45AQ9NWC5 275 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 KCMF1Q9P0J7 381 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 UTS2RQ9UKP6 389 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 PCDHA9Q9Y5H5 950 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 ARID1AO14497 2285 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 ANK2Q01484 3957 aa11.53□□□□□ -0.56
CLSTN3-208ENST00000538933 LOC100653049A0A140TA62 436 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 OR2W5A6NFC9 320 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 CDK2AP1O14519 115 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 PDPK1O15530 556 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 DNAJB6O75190 326 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 PRKRAO75569 313 aaKnown RBP11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 SLC25A12O75746 678 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 KRT34O76011 436 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 RAF1P04049 648 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 FHP07954 510 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 PCSK6P29122 969 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 MXRA7P84157 204 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 OC90Q02509 493 aaPredicted RBP11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 STX4Q12846 297 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 STX5Q13190 355 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 TIGD2Q4W5G0 525 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 SPANXN4Q5MJ08 99 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 C6orf163Q5TEZ5 329 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 SLC48A1Q6P1K1 146 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 ANKRD37Q7Z713 158 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 SNX32Q86XE0 403 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 ZNF595Q8IYB9 648 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 SAMD14Q8IZD0 417 aaPredicted RBP11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 LGI4Q8N135 537 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 FITM2Q8N6M3 262 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 OR7A2PQ8NGA2 310 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 OR4K14Q8NGD5 310 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 C16orf52Q8NHV5 167 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 ZFP28Q8NHY6 868 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 RP9Q8TA86 221 aaKnown RBP11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 TANKQ92844 425 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 TESCQ96BS2 214 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 OR1F2PQ96R84 312 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 DUSP26Q9BV47 211 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 EHD3Q9NZN3 535 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 CRIM1Q9NZV1 1036 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 ATP6V1HQ9UI12 483 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 PCDHGB4Q9UN71 923 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms