RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 DPRXA6NFQ7 191 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 PRAMEF25A6NGN4 478 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 SHISA9B4DS77 424 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 PPM1BO75688 479 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 APEX1P27695 318 aaKnown RBP8.17□□□□□ -1.1
USP28-205ENST00000537706 HNRNPH1P31943 449 aaKnown RBP8.17□□□□□ -1.1
USP28-205ENST00000537706 MARCKSL1P49006 195 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 IGLV3-21P80748 117 aaPredicted RBP8.17□□□□□ -1.1
USP28-205ENST00000537706 ZNF544Q6NX49 715 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 BBOF1Q8ND07 529 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 TANKQ92844 425 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 KISS1RQ969F8 398 aaPredicted RBP8.17□□□□□ -1.1
USP28-205ENST00000537706 TMCO6Q96DC7 493 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 KCNC2Q96PR1 638 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 GPR21Q99679 349 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 IL22Q9GZX6 179 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 MS4A12Q9NXJ0 267 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 BFARQ9NZS9 450 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 GRIP1Q9Y3R0 1128 aa8.17□□□□□ -1.1
USP28-205ENST00000537706 ROS1P08922 2347 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 C2orf72A6NCS6 295 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 POM121CA8CG34 1229 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 HRKO00198 91 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 ABCD4O14678 606 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 POLR3GO15318 223 aaPredicted RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 FGF17O60258 216 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 RAMP1O60894 148 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 SS18L1O75177 396 aaPredicted RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 SYNGR4O95473 234 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 ABCB1P08183 1280 aaPredicted RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 HKR1P10072 659 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 TCEA1P23193 301 aaKnown RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 SESN2P58004 480 aaPredicted RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 DHX34Q14147 1143 aaKnown RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 ACAP2Q15057 778 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 RAET1LQ5VY80 246 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 GTF2IRD2BQ6EKJ0 949 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 TMIGD1Q6UXZ0 262 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 GTF2IRD2Q86UP8 949 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 OR4N5Q8IXE1 308 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 PRR22Q8IZ63 422 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 PIAS4Q8N2W9 510 aaPredicted RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 C17orf47Q8NEP4 570 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 OR4K17Q8NGC6 315 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 GIMAP7Q8NHV1 300 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 FBXL8Q96CD0 374 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 VPS39Q96JC1 886 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 OR4K3Q96R72 315 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 PITHD1Q9GZP4 211 aaPredicted RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 AICDAQ9GZX7 198 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 SAP130Q9H0E3 1048 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 RAB17Q9H0T7 212 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 GALNT9Q9HCQ5 603 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 FBXO34Q9NWN3 711 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 ADAMTS6Q9UKP5 1117 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 MCTS1Q9ULC4 181 aaKnown RBP8.16□□□□□ -1.1
USP28-205ENST00000537706 NFU1Q9UMS0 254 aa8.16□□□□□ -1.1
USP28-205ENST00000537706 FAM187AA6NFU0 413 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 BCL10O95999 233 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 DHRS4L1P0CG22 281 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 ZFP36P26651 326 aaKnown RBP8.15□□□□□ -1.1
USP28-205ENST00000537706 NMBRP28336 390 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 ECHS1P30084 290 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 GALNSP34059 522 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 PTPN7P35236 360 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 RWDD2BP57060 319 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 PPA1Q15181 289 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 SFRP5Q5T4F7 317 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 SLC22A25Q6T423 547 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 THOC6Q86W42 341 aaKnown RBP8.15□□□□□ -1.1
USP28-205ENST00000537706 FOXN4Q96NZ1 517 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 MAPKAP1Q9BPZ7 522 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 TBCDQ9BTW9 1192 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 RPF2Q9H7B2 306 aaKnown RBP8.15□□□□□ -1.1
USP28-205ENST00000537706 UNKLQ9H9P5 680 aaKnown RBP8.15□□□□□ -1.1
USP28-205ENST00000537706 ETNK1Q9HBU6 452 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 DDX28Q9NUL7 540 aaKnown RBP8.15□□□□□ -1.1
USP28-205ENST00000537706 PAQR5Q9NXK6 330 aaPredicted RBP8.15□□□□□ -1.1
USP28-205ENST00000537706 CFL2Q9Y281 166 aa8.15□□□□□ -1.1
USP28-205ENST00000537706 UTP11Q9Y3A2 253 aaKnown RBP8.15□□□□□ -1.1
USP28-205ENST00000537706 NINQ8N4C6 2090 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 GOLGA8KD6RF30 607 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 GOLGA8TH3BQL2 631 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 ABCD3P28288 659 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 DSCR4P56555 118 aaPredicted RBP8.15□□□□□ -1.11
USP28-205ENST00000537706 CLDN15P56746 228 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 DR1Q01658 176 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 PLCXD2Q0VAA5 305 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 THOC5Q13769 683 aaKnown RBP8.15□□□□□ -1.11
USP28-205ENST00000537706 P2RY6Q15077 328 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 AP5B1Q2VPB7 878 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 KLHL17Q6TDP4 642 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 TMEM108Q6UXF1 575 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 TBC1D1Q86TI0 1168 aaPredicted RBP8.15□□□□□ -1.11
USP28-205ENST00000537706 SVOPLQ8N434 492 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 METTL25Q8N6Q8 603 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 GOLGA6L1Q8N7Z2 621 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 WDSUB1Q8N9V3 476 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 CD200R1Q8TD46 325 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 IFT81Q8WYA0 676 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms