RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CPTPQ5TA50 214 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 PRAMEF20Q5VT98 475 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 BICRALQ6AI39 1079 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 OR4N2Q8NGD1 307 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 OR5M3Q8NGP4 307 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 ZFP28Q8NHY6 868 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 PIWIL2Q8TC59 973 aaKnown RBP11.9□□□□□ -0.5
VPS28-216ENST00000533806 OR5P2Q8WZ92 322 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 DIO2Q92813 273 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 TMBIM1Q969X1 311 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 C7orf26Q96N11 449 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 NODALQ96S42 347 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 BHLHE41Q9C0J9 482 aaPredicted RBP11.9□□□□□ -0.5
VPS28-216ENST00000533806 WDR55Q9H6Y2 383 aaPredicted RBP11.9□□□□□ -0.5
VPS28-216ENST00000533806 ZFP64Q9NPA5 681 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 MARCOQ9UEW3 520 aaPredicted RBP11.9□□□□□ -0.5
VPS28-216ENST00000533806 SLC5A6Q9Y289 635 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 SVILO95425 2214 aa11.9□□□□□ -0.51
VPS28-216ENST00000533806 A0A1B0GVC2 190 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 A0A1W2PRB8 838 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 TRPC5OSA6NMA1 111 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 FAM166BA8MTA8 275 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 SLC19A2O60779 497 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 DDX5P17844 614 aaKnown RBP11.89□□□□□ -0.51
VPS28-216ENST00000533806 EFNA1P20827 205 aaPredicted RBP11.89□□□□□ -0.51
VPS28-216ENST00000533806 CA7P43166 264 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 MAGEA5P43359 124 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 PNLIPRP2P54317 469 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 PPP2R2AP63151 447 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 KCNJ2P63252 427 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 PHC1P78364 1004 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 HSF1Q00613 529 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 PLCXD2Q0VAA5 305 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 SNTA1Q13424 505 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 GAB1Q13480 694 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 CYP27C1Q4G0S4 372 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 SLC9B1Q4ZJI4 515 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 SLC22A16Q86VW1 577 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 SPPL2CQ8IUH8 684 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 SLC44A2Q8IWA5 706 aaPredicted RBP11.89□□□□□ -0.51
VPS28-216ENST00000533806 GHDCQ8N2G8 530 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 OR8J2Q8NGG1 315 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 ACTRT2Q8TDY3 377 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 TESCQ96BS2 214 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 FAM120BQ96EK7 910 aaKnown RBP11.89□□□□□ -0.51
VPS28-216ENST00000533806 TEX37Q96LM6 180 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 RILPQ96NA2 401 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 COL21A1Q96P44 957 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 PSMG3-AS1Q96PY0 264 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 PRPF18Q99633 342 aaKnown RBP11.89□□□□□ -0.51
VPS28-216ENST00000533806 DOHHQ9BU89 302 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 UBQLN3Q9H347 655 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 ZNF703Q9H7S9 590 aaPredicted RBP11.89□□□□□ -0.51
VPS28-216ENST00000533806 SLCO1B3Q9NPD5 702 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 ATAD3AQ9NVI7 634 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 MAPRE3Q9UPY8 281 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 GPR45Q9Y5Y3 372 aa11.89□□□□□ -0.51
VPS28-216ENST00000533806 CROCCQ5TZA2 2017 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 A0A1B0GTH9 108 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 TTC36A6NLP5 189 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 ZNHIT1O43257 154 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 LRRTM2O43300 516 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 EMC8O43402 210 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 ABCB7O75027 752 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 ICOSLGO75144 302 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 NKX2-2O95096 273 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 CELA3AP09093 270 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 KITP10721 976 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 MFSD12Q6NUT3 480 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 EPGNQ6UW88 154 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 SPATA19Q7Z5L4 167 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 WDR53Q7Z5U6 358 aaPredicted RBP11.88□□□□□ -0.51
VPS28-216ENST00000533806 FAM109AQ8N4B1 249 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 GOLGA6L1Q8N7Z2 621 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 NUP43Q8NFH3 380 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 CEP70Q8NHQ1 597 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 FAM110BQ8TC76 370 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 TMEM41AQ96HV5 264 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 MAGED4Q96JG8 741 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 ADOQ96SZ5 270 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 DUSP26Q9BV47 211 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 DEFB127Q9H1M4 99 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 CXorf36Q9H7Y0 433 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 ACKR4Q9NPB9 350 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 AIG1Q9NVV5 245 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 QPCTLQ9NXS2 382 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 HRH3Q9Y5N1 445 aa11.88□□□□□ -0.51
VPS28-216ENST00000533806 GOLGA8QA0A0J9YX86 632 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 A0A1B0GUH1 482 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 GOLGA8OA6NCC3 632 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 B4DXG7 233 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 GOLGA8NF8WBI6 632 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 ACOT7O00154 380 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 RNASET2O00584 256 aaKnown RBP11.87□□□□□ -0.51
VPS28-216ENST00000533806 SUSD5O60279 629 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 REM1O75628 298 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 AGFG2O95081 481 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 C6orf47O95873 294 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 IGKV1D-16P01601 117 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 IL12AP29459 219 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms