RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 GPC6Q9Y625 555 aaPredicted RBP19.75■□□□□ 0.75
VPS28-212ENST00000530836 FREM2Q5SZK8 3169 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 ASPMQ8IZT6 3477 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 IGLV3-12A0A075B6K2 115 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 IGKV3D-11A0A0A0MRZ8 115 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 TGFBR3LH3BV60 316 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 MFN2O95140 757 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 MT-ND1P03886 318 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 IFNA16P05015 189 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 CT62P0C5K7 136 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 ACADSP16219 412 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 ITGA2P17301 1181 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 DCDP81605 110 aaKnown RBP19.74■□□□□ 0.75
VPS28-212ENST00000530836 HPCAP84074 193 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 GPAT3Q53EU6 434 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 PPP4R4Q6NUP7 873 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 VTCN1Q7Z7D3 282 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 SLC16A11Q8NCK7 471 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 SLC9A6Q92581 669 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 HOXB13Q92826 284 aaPredicted RBP19.74■□□□□ 0.75
VPS28-212ENST00000530836 VPS50Q96JG6 964 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 CIB1Q99828 191 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 CCDC86Q9H6F5 360 aaKnown RBP19.74■□□□□ 0.75
VPS28-212ENST00000530836 TRIM45Q9H8W5 580 aaPredicted RBP19.74■□□□□ 0.75
VPS28-212ENST00000530836 ANKRA2Q9H9E1 313 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 NECTIN3Q9NQS3 549 aa19.74■□□□□ 0.75
VPS28-212ENST00000530836 MYOCOSA0A1B0GUC4 107 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 PRAMEF27A3QJZ7 478 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 PRAMEF2O60811 474 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 JRKO75564 520 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 CBX7O95931 251 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 ZNF26P17031 533 aaPredicted RBP19.73■□□□□ 0.75
VPS28-212ENST00000530836 S1PR1P21453 382 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 OCA2Q04671 838 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 TAF11Q15544 211 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 ZNHIT3Q15649 155 aaPredicted RBP19.73■□□□□ 0.75
VPS28-212ENST00000530836 ARHGAP11BQ3KRB8 267 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 TBC1D25Q3MII6 688 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 MINDY4Q4G0A6 757 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 NKAIN1Q4KMZ8 207 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 WLSQ5T9L3 541 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 MFSD4BQ5TF39 518 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 SVOPLQ8N434 492 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 OR7G1Q8NGA0 311 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 PMM1Q92871 262 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 SLC35A4Q96G79 324 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 BTBD9Q96Q07 612 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 ZNF347Q96SE7 839 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 FOXJ2Q9P0K8 574 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 FRYQ5TBA9 3013 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 C1QTNF9BB2RNN3 333 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 TMEM229AB2RXF0 380 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 OPN1SWP03999 348 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 C1QTNF9P0C862 333 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 MAP3K8P41279 467 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 RHAGQ02094 409 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 KCNC4Q03721 635 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 FUT7Q11130 342 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 RPS26P11Q5JNZ5 115 aaPredicted RBP19.73■□□□□ 0.75
VPS28-212ENST00000530836 UNQ6494/PRO21346Q6UXR6 183 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 KBTBD2Q8IY47 623 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 CHDHQ8NE62 594 aaPredicted RBP19.73■□□□□ 0.75
VPS28-212ENST00000530836 OR52R1Q8NGF1 315 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 OR10Q1Q8NGQ4 319 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 SPPL2AQ8TCT8 520 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 PROX1Q92786 737 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 SDCCAG3Q96C92 435 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 C7orf34Q96L11 122 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 COQ10BQ9H8M1 238 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 SEC14L3Q9UDX4 400 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 OAZ3Q9UMX2 235 aa19.73■□□□□ 0.75
VPS28-212ENST00000530836 TCRBV16S1A1N1A0A5B0 115 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 CPNE3O75131 537 aaKnown RBP19.72■□□□□ 0.75
VPS28-212ENST00000530836 H6PDO95479 791 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 CHRM4P08173 479 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 ZNF23P17027 643 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 TNNI3P19429 210 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 FUT5Q11128 374 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 SFT2D3Q587I9 215 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 OR2T5Q6IEZ7 315 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 ZDHHC13Q8IUH4 622 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 PLPP5Q8NEB5 264 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 OR2T29Q8NH02 315 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 FKBP10Q96AY3 582 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 COL21A1Q96P44 957 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 LMF2Q9BU23 707 aaKnown RBP19.72■□□□□ 0.75
VPS28-212ENST00000530836 SPRY4Q9C004 299 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 NTN4Q9HB63 628 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 CACYBPQ9HB71 228 aaKnown RBP19.72■□□□□ 0.75
VPS28-212ENST00000530836 POLE3Q9NRF9 147 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 PRODH2Q9UF12 536 aa19.72■□□□□ 0.75
VPS28-212ENST00000530836 DSPPQ9NZW4 1301 aa19.71■□□□□ 0.75
VPS28-212ENST00000530836 SAC3D1A6NKF1 404 aa19.71■□□□□ 0.75
VPS28-212ENST00000530836 RASAL1O95294 804 aa19.71■□□□□ 0.75
VPS28-212ENST00000530836 TIAF1O95411 115 aa19.71■□□□□ 0.75
VPS28-212ENST00000530836 ALBP02768 609 aa19.71■□□□□ 0.75
VPS28-212ENST00000530836 GUSBP08236 651 aa19.71■□□□□ 0.75
VPS28-212ENST00000530836 CYC1P08574 325 aa19.71■□□□□ 0.75
VPS28-212ENST00000530836 ACP2P11117 423 aa19.71■□□□□ 0.75
VPS28-212ENST00000530836 ATP6V1C1P21283 382 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms