RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PISDQ9UG56 409 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 SATB2Q9UPW6 733 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 COL27A1Q8IZC6 1860 aaPredicted RBP19.56■□□□□ 0.72
VPS28-208ENST00000527797 CCDC187A0A096LP49 1063 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 TTC36A6NLP5 189 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 IDSB3KWA1 339 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 CAPNS1P04632 268 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 EMP2P54851 167 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 FAAH2Q6GMR7 532 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 MRPL14Q6P1L8 145 aaKnown RBP19.55■□□□□ 0.72
VPS28-208ENST00000527797 OLIG3Q7RTU3 272 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 SLCO6A1Q86UG4 719 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 ZNF615Q8N8J6 731 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 CHDHQ8NE62 594 aaPredicted RBP19.55■□□□□ 0.72
VPS28-208ENST00000527797 SPPL2AQ8TCT8 520 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 METTL21AQ8WXB1 218 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 VSTM2LQ96N03 204 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 DDA1Q9BW61 102 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 SLC38A1Q9H2H9 487 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 DNAJB9Q9UBS3 223 aa19.55■□□□□ 0.72
VPS28-208ENST00000527797 NXT1Q9UKK6 140 aaKnown RBP19.55■□□□□ 0.72
VPS28-208ENST00000527797 PROB1E7EW31 1015 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 PLD2O14939 933 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 ALOX12BO75342 701 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 POU6F2P78424 691 aaPredicted RBP19.54■□□□□ 0.72
VPS28-208ENST00000527797 CHRNEQ04844 493 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 DCST2Q5T1A1 773 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 C16orf52Q8NHV5 167 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 SLC2A12Q8TD20 617 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 PIK3R3Q92569 461 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 VPS50Q96JG6 964 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 SDF2Q99470 211 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 OR8D2Q9GZM6 311 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 WDR54Q9H977 334 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 AKIRIN1Q9H9L7 192 aaPredicted RBP19.54■□□□□ 0.72
VPS28-208ENST00000527797 DTNAQ9Y4J8 743 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 C9J4A7 227 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 hCG_2039718K7EN88 272 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 GNGT2O14610 69 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 CNOT3O75175 753 aaKnown RBP19.54■□□□□ 0.72
VPS28-208ENST00000527797 CLPSP04118 112 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 CYC1P08574 325 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 CD247P20963 164 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 SLC5A2P31639 672 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 LIMK1P53667 647 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 FOXL2P58012 376 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 VLDLRP98155 873 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 PSG6Q00889 435 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 DUSP7Q16829 419 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 LANCL3Q6ZV70 420 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 PIWIL3Q7Z3Z3 882 aaKnown RBP19.54■□□□□ 0.72
VPS28-208ENST00000527797 GALNT6Q8NCL4 622 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 ZNF721Q8TF20 911 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 GEMIN6Q8WXD5 167 aaKnown RBP19.54■□□□□ 0.72
VPS28-208ENST00000527797 PROX1Q92786 737 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 SPSB2Q99619 263 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 TRIM45Q9H8W5 580 aaPredicted RBP19.54■□□□□ 0.72
VPS28-208ENST00000527797 MTHFD2LQ9H903 347 aaPredicted RBP19.54■□□□□ 0.72
VPS28-208ENST00000527797 C3orf18Q9UK00 162 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 CFL2Q9Y281 166 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 PADI2Q9Y2J8 665 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 WDR45Q9Y484 360 aa19.54■□□□□ 0.72
VPS28-208ENST00000527797 DSPPQ9NZW4 1301 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 OTOGLQ3ZCN5 2332 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 FCMRO60667 390 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 STX11O75558 287 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 DDAH2O95865 285 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 ALPPP05187 535 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 KCNJ5P48544 419 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 SLC37A1P57057 533 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 FAM199XQ6PEV8 388 aaPredicted RBP19.53■□□□□ 0.72
VPS28-208ENST00000527797 ANKRD37Q7Z713 158 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 MORN4Q8NDC4 146 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 WDR36Q8NI36 951 aaKnown RBP19.53■□□□□ 0.72
VPS28-208ENST00000527797 C7orf34Q96L11 122 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 SLC46A1Q96NT5 459 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 CIB1Q99828 191 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 CRB3Q9BUF7 120 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 CACYBPQ9HB71 228 aaKnown RBP19.53■□□□□ 0.72
VPS28-208ENST00000527797 DTX4Q9Y2E6 619 aa19.53■□□□□ 0.72
VPS28-208ENST00000527797 NUP210LQ5VU65 1888 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 GXYLT2A0PJZ3 443 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 SAC3D1A6NKF1 404 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 STK17BO94768 372 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 PRSS23O95084 383 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 IGKV3-11P04433 115 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 FESP07332 822 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 CYP27C1Q4G0S4 372 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 SFT2D3Q587I9 215 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 CCNJQ5T5M9 372 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 TYW3Q6IPR3 259 aaKnown RBP19.52■□□□□ 0.72
VPS28-208ENST00000527797 IZUMO2Q6UXV1 221 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 FRRS1Q6ZNA5 592 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 ZNF350Q9GZX5 532 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 VCXQ9H320 206 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 NTN4Q9HB63 628 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 Q9N2J8 555 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 POLE3Q9NRF9 147 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 MKLN1Q9UL63 735 aa19.52■□□□□ 0.72
VPS28-208ENST00000527797 ABCG2Q9UNQ0 655 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms