RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 CWH43Q9H720 699 aa15.4■□□□□ 0.06
PCDHA3-201ENST00000522353 FARSAQ9Y285 508 aaKnown RBP15.4■□□□□ 0.06
PCDHA3-201ENST00000522353 A0A1B0GVC2 190 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 SGK494L7N484 410 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 STOMP27105 288 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 PRLHRP49683 370 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 HTR6P50406 440 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 EPHA4P54764 986 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 PRPS1P60891 318 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 ZNF675Q8TD23 568 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 MUS81Q96NY9 551 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 HCSTQ9UBK5 93 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 ZFAND5O76080 213 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 UGT2B10P36537 528 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 ZNF140P52738 457 aaPredicted RBP15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 TDHQ8IZJ6 230 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 WACQ9BTA9 647 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 HS3ST2Q9Y278 367 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 OR6C70A6NIJ9 312 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 FOXE1O00358 373 aaPredicted RBP15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 POU3F4P49335 361 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 CTSCP53634 463 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 TRA2BP62995 288 aaKnown RBP15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 BEND4Q6ZU67 534 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 NEIL2Q969S2 332 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 NUFIP1Q9UHK0 495 aaKnown RBP15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 MAOBP27338 520 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 SFTPDP35247 375 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 S100A10P60903 97 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 DCAF12Q5T6F0 453 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 SHFQ7M4L6 423 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 HS3ST5Q8IZT8 346 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 BOLLQ8N9W6 283 aaKnown RBP15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 OR4K5Q8NGD3 323 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 IGSF5Q9NSI5 407 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 MYH11P35749 1972 aa15.39■□□□□ 0.05
PCDHA3-201ENST00000522353 GPR4P46093 362 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 CSNK2A1P68400 391 aaPredicted RBP15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 C18orf21Q32NC0 220 aaPredicted RBP15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 PIANPQ8IYJ0 282 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 OR52E2Q8NGJ4 325 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 SNIP1Q8TAD8 396 aaKnown RBP15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 NEIL3Q8TAT5 605 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 ARNT2Q9HBZ2 717 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 SLAMF7Q9NQ25 335 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 ZNF701Q9NV72 531 aaPredicted RBP15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 LOC285095A0A1B0GVY8 99 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 H3BNC9 293 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 NDUFB2O95178 105 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 MAGEA2P43356 314 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 C6orf141Q5SZD1 244 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 DENND6BQ8NEG7 585 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 SLC41A3Q96GZ6 507 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 RBM24Q9BX46 236 aaKnown RBP15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 PGAP2Q9UHJ9 254 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 SLC35A3Q9Y2D2 325 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 LOC100509620A0A075B734 347 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 FXYD6-FXYD2A0A087WZ82 144 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 A6NIZ1 184 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 KIAA0355O15063 1070 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 SLITRK5O94991 958 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 PRLP01236 227 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 ZNF806P0C7X5 589 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 CD46P15529 392 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 PGGT1BP53609 377 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 RRADP55042 308 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 RAP1BP61224 184 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 RAP1AP62834 184 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 FOXRED2Q8IWF2 684 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 SLC37A3Q8NCC5 494 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 MYRFLQ96LU7 910 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 HDHD5Q9BXW7 423 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 FXYD6Q9H0Q3 95 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 KCNIP1Q9NZI2 227 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 BTNL2Q9UIR0 455 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 KCNS2Q9ULS6 477 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 SETD1AO15047 1707 aaKnown RBP15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 TRBV2A0A0J9YWF9 115 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 ZSCAN5BA6NJL1 495 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 MC3RP41968 323 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 TMBIM6P55061 237 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 MPP2Q14168 576 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 SPTSSAQ969W0 71 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 NAALAD2Q9Y3Q0 740 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 RNF215Q9Y6U7 377 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 ENPP4Q9Y6X5 453 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 CHD4Q14839 1912 aa15.38■□□□□ 0.05
PCDHA3-201ENST00000522353 FGF4P08620 206 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 CRABP1P29762 137 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 NKX3-2P78367 333 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 ZNF45Q02386 682 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 HNRNPA0Q13151 305 aaKnown RBP15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 PLEKHN1Q494U1 663 aaPredicted RBP15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 TMEM184AQ6ZMB5 413 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 ZNF584Q8IVC4 421 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 ZNF619Q8N2I2 560 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 TCTN2Q96GX1 697 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 OR5B2Q96R09 309 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 NENFQ9UMX5 172 aa15.37■□□□□ 0.05
PCDHA3-201ENST00000522353 ERVK-19Q9WJR5 959 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms