RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	PEPD	P12955	493 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	DPP4	P27487	766 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	KIR2DL2	P43627	348 aa	Predicted RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	KCNJ5	P48544	419 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	EMD	P50402	254 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	IRF9	Q00978	393 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	ACAP2	Q15057	778 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	TRMT12	Q53H54	448 aa	Known RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	C10orf62	Q5T681	223 aa	Predicted RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	FRG2	Q64ET8	278 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	TTC19	Q6DKK2	380 aa	Predicted RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	OR5M10	Q6IEU7	315 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	METTL2B	Q6P1Q9	378 aa	Known RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	PLEKHM3	Q6ZWE6	761 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	ZNF550	Q7Z398	422 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	UBQLNL	Q8IYU4	475 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	GBP7	Q8N8V2	638 aa	Predicted RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	OR52R1	Q8NGF1	315 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	SLC35A4	Q96G79	324 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	MARK4	Q96L34	752 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	FRG2B	Q96QU4	278 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	PIGQ	Q9BRB3	760 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	NOL11	Q9H8H0	719 aa	Known RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	WHRN	Q9P202	907 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	PSME2	Q9UL46	239 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	GPR55	Q9Y2T6	319 aa	Predicted RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	CHD3	Q12873	2000 aa	Known RBP	14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	COL6A5	A8TX70	2615 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	ZAN	Q9Y493	2812 aa		14.23	□□□□□ -0.13
LMNA-223	ENST00000515459	OR7A17	O14581	309 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	EMC8	O43402	210 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	SIX3	O95343	332 aa	Predicted RBP	14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	TCEA1	P23193	301 aa	Known RBP	14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	LOX	P28300	417 aa	Predicted RBP	14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	CCNG1	P51959	295 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	SIRPA	P78324	504 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	KLC3	Q6P597	504 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	METTL4	Q8N3J2	472 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	MEIOB	Q8N635	442 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	OR52B6	Q8NGF0	335 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	KLHL29	Q96CT2	875 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	ZNF845	Q96IR2	970 aa	Predicted RBP	14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	ADO	Q96SZ5	270 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	DPH5	Q9H2P9	285 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	CPSF2	Q9P2I0	782 aa	Known RBP	14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	HEY2	Q9UBP5	337 aa		14.22	□□□□□ -0.13
LMNA-223	ENST00000515459	CRLF1	O75462	422 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	CGA	P01215	116 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	C2	P06681	752 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	CD8B	P10966	210 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	PAX1	P15863	534 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	GRK2	P25098	689 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	KRT20	P35900	424 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	PAFAH1B1	P43034	410 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	EEFSEC	P57772	596 aa	Known RBP	14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	B3GALT5-AS1	P59052	145 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	MRPS35	P82673	323 aa	Known RBP	14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	DUSP2	Q05923	314 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	IFT88	Q13099	833 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	NAB1	Q13506	487 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	EFR3A	Q14156	821 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	FGFBP1	Q14512	234 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	C22orf34	Q6ZV56	151 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	COMMD6	Q7Z4G1	85 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	TMEM171	Q8WVE6	324 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	FIG4	Q92562	907 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	CAVIN3	Q969G5	261 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	NTMT1	Q9BV86	223 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	SAR1B	Q9Y6B6	198 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	ZNF780B	Q9Y6R6	833 aa		14.21	□□□□□ -0.13
LMNA-223	ENST00000515459	TSPAN2	O60636	221 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	TNFRSF21	O75509	655 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	BCAS2	O75934	225 aa	Predicted RBP	14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	KLHL2	O95198	593 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	CT45A8	P0DMV1	189 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	CT45A9	P0DMV2	189 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	PCSK2	P16519	638 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	TBXA2R	P21731	343 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	IL12B	P29460	328 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	STX2	P32856	288 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	DSCR4	P56555	118 aa	Predicted RBP	14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	MRPS25	P82663	173 aa	Known RBP	14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	LTB4R	Q15722	352 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	CT45A2	Q5DJT8	189 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	FAM180B	Q6P0A1	224 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	ZNF610	Q8N9Z0	462 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	OR4K17	Q8NGC6	315 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	FBF1	Q8TES7	1133 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	IGFBPL1	Q8WX77	278 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	NANOS1	Q8WY41	292 aa	Known RBP	14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	TM4SF18	Q96CE8	201 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	CNRIP1	Q96F85	164 aa	Predicted RBP	14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	ZNF681	Q96N22	645 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	BTBD9	Q96Q07	612 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	ERP44	Q9BS26	406 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	PINK1	Q9BXM7	581 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	KLHL4	Q9C0H6	718 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	CXorf56	Q9H5V9	222 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	RNF122	Q9H9V4	155 aa		14.2	□□□□□ -0.14
LMNA-223	ENST00000515459	PROCR	Q9UNN8	238 aa		14.2	□□□□□ -0.14

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms