RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ALDOAP04075 364 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 HMGN1P05114 100 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC35E2BP0CK96 405 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 NPPBP16860 134 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 NUP62P37198 522 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 MAGEA3P43357 314 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 EMP2P54851 167 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 NME5P56597 212 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 HERVK_113P63132 956 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 TIAL1Q01085 375 aaKnown RBP eCLIP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 PCBP2Q15366 365 aaKnown RBP eCLIP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 ZXDCQ2QGD7 858 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 TUSC1Q2TAM9 212 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 AADACL4Q5VUY2 407 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CRYBG3Q68DQ2 2970 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 TTC33Q6PID6 262 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 USP51Q70EK9 711 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC16A13Q7RTY0 426 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 IL17RDQ8NFM7 739 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 AKR7LQ8NHP1 331 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 ANGPTL6Q8NI99 470 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 ADAMTS16Q8TE57 1224 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 THOC3Q96J01 351 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 JSRP1Q96MG2 331 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 BBS4Q96RK4 519 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CNPPD1Q9BV87 410 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 EBPLQ9BY08 206 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 OR8D2Q9GZM6 311 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 IPPKQ9H8X2 491 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 P4HTMQ9NXG6 502 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 TMEM216Q9P0N5 145 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 TCFL5Q9UL49 500 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 ENTPD4Q9Y227 616 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 RNF11Q9Y3C5 154 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 AP4S1Q9Y587 144 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 TEP1Q99973 2627 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 IGKV1-8A0A0C4DH67 115 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 LOC100653049A0A140TA62 436 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 SAGE2PA6NJ88 616 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 IDSB3KWA1 339 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 H2AFYO75367 372 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 KRT34O76011 436 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 GNAO1P09471 354 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CERS1P27544 350 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CDK9P50750 372 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CCR8P51685 355 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 EPHA4P54764 986 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 NAGLUP54802 743 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 EIF2S3LQ2VIR3 472 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 PDZK1Q5T2W1 519 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 ADAMTSL2Q86TH1 951 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CDH26Q8IXH8 852 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 KRT78Q8N1N4 520 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CISD2Q8N5K1 135 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 BMPERQ8N8U9 685 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 STAG3L4Q8TBR4 150 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 SNX33Q8WV41 574 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 NR4A3Q92570 626 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 FAM111AQ96PZ2 611 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 HOXD1Q9GZZ0 328 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CXorf21Q9HAI6 301 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 HMG20AQ9NP66 347 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 THUMPD1Q9NXG2 353 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 NUP50Q9UKX7 468 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 PTGDR2Q9Y5Y4 395 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 M0R3G1 203 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 COPEO14579 308 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 LRATO95237 230 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 CBR1P16152 277 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 FDXRP22570 491 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 PRKAA2P54646 552 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 DEFA6Q01524 100 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 HMGCS1Q01581 520 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC3A1Q07837 685 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 DOC2AQ14183 400 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 PRR30Q53SZ7 412 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 GRTP1Q5TC63 336 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 SBSNQ6UWP8 590 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 TMIGD1Q6UXZ0 262 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 IKBIPQ70UQ0 350 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 DDIASQ8IXT1 998 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 D2HGDHQ8N465 521 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 AMER3Q8N944 861 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF540Q8NDQ6 660 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 FDCSPQ8NFU4 85 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 ENKURQ8TC29 256 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC45A3Q96JT2 553 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 OR2B2Q9GZK3 357 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 TFB2MQ9H5Q4 396 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 GPRC5BQ9NZH0 403 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 GIMAP2Q9UG22 337 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 MTORP42345 2549 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 TNRC6AQ8NDV7 1962 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 INTS1Q8N201 2190 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 A0A1W2PPV9 198 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 CDRT15L2A8MXV6 281 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 PDE9AO76083 593 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF250P15622 560 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 PNLIPP16233 465 aa7.4□□□□□ -1.22
LIMCH1-219ENST00000514096 CSNK1G2P78368 415 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms