RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PARP16Q8N5Y8 322 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 OR52H1Q8NGJ2 320 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 FEVQ99581 238 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 GCM1Q9NP62 436 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 ATF5Q9Y2D1 282 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 C2orf78A6NCI8 922 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 CXorf49A8MYA2 514 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 SMLR1H3BR10 107 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 SOX1O00570 391 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 CYTIPO60759 359 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 SNCGO76070 127 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 ADRB1P08588 477 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 MPC1LP0DKB6 136 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 MC3RP41968 323 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 TAS2R46P59540 309 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 VARS2Q5ST30 1063 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 KIAA0907Q7Z7F0 614 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF561Q8N587 486 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 PHOSPHO1Q8TCT1 267 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 PHYHIPQ92561 330 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 ESAMQ96AP7 390 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 TMPRSS5Q9H3S3 457 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 CHRNA9Q9UGM1 479 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 POLHQ9Y253 713 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 PRELID3BQ9Y3B1 194 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 ABCA9Q8IUA7 1624 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 TSPOAP1O95153 1857 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF536O15090 1300 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 TNFSF8P32971 234 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 SPCS2Q15005 226 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 INAVAQ3KP66 663 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 TIPARPQ7Z3E1 657 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 FBXO15Q8NCQ5 510 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 SIGLEC10Q96LC7 697 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 OR6C2Q9NZP2 312 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 CLDN5O00501 218 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 NIPSNAP2O75323 286 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 LPLP06858 475 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 MAT2AP31153 395 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ACVR1BP36896 505 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 HBG1P69891 147 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 HBG2P69892 147 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 BCL7AQ4VC05 210 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ZMAT1Q5H9K5 638 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 AGTRAPQ6RW13 159 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ADIPOR2Q86V24 386 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SULF2Q8IWU5 870 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 BSCL2Q96G97 398 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC29A1Q99808 456 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 GPR83Q9NYM4 423 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF230Q9UIE0 474 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SARDHQ9UL12 918 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 COPS3Q9UNS2 423 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC22A14Q9Y267 594 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 HRH3Q9Y5N1 445 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC22A7Q9Y694 548 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 MSTNO14793 375 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 FANCGO15287 622 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 GLUD1P00367 558 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 JUNDP17535 347 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 KITLGP21583 273 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 TIA1P31483 386 aaKnown RBP eCLIP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ACTR1AP61163 376 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 EEF1DP3Q658K8 133 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 USP51Q70EK9 711 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 CILP2Q8IUL8 1156 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 KLHDC8BQ8IXV7 354 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 OR4K14Q8NGD5 310 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 OR51L1Q8NGJ5 315 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC16A10Q8TF71 515 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 FAM83CQ9BQN1 747 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 NIFKQ9BYG3 293 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 NKX6-2Q9C056 277 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 DNMT3AQ9Y6K1 912 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 RIMBP3CA6NJZ7 1639 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 RIMBP3BA6NNM3 1639 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 RIMBP3Q9UFD9 1639 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 CCDC163A0A0D9SF12 145 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 MTMR11A4FU01 709 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ARGFXA6NJG6 315 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 TMEM233B4DJY2 109 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SPP1P10451 314 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 CDKN1CP49918 316 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 DBPQ10586 325 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 VAMP3Q15836 100 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 MICAQ29983 383 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 TIGD3Q6B0B8 471 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 NDUFAF7Q7L592 441 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 MRPL10Q7Z7H8 261 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ADAMTS18Q8TE60 1221 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 PSMG2Q969U7 264 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 TMEM18Q96B42 140 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 TBC1D20Q96BZ9 403 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 METTL2AQ96IZ6 378 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 HOXD1Q9GZZ0 328 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF586Q9NXT0 402 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 TAS2R16Q9NYV7 291 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 NFAT5O94916 1531 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 ADCY10Q96PN6 1610 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms