RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ANTXR2P58335 489 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 HSD11B2P80365 405 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ZP2Q05996 745 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 MSMO1Q15800 293 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 HLA-BQ31612 363 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 IER5Q5VY09 327 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 LIPJQ5W064 366 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PM20D1Q6GTS8 502 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 RAET1GQ6H3X3 334 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 BRAT1Q6PJG6 821 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 BRICD5Q6PL45 260 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TMPPEQ6ZT21 453 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ASPGQ86U10 573 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TRIM48Q8IWZ4 208 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 SIDT2Q8NBJ9 832 aaKnown RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 POGLUT1Q8NBL1 392 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF485Q8NCK3 441 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 RCBTB1Q8NDN9 531 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 STXBP6Q8NFX7 210 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 OR51T1Q8NGJ9 327 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 OR56A3Q8NH54 315 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 OR5W2Q8NH69 310 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 SLC7A6Q92536 515 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TMBIM1Q969X1 311 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CPB2Q96IY4 423 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PRAP1Q96NZ9 151 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 HDHD5Q9BXW7 423 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TBL1XR1Q9BZK7 514 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 XYLT2Q9H1B5 865 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TIGARQ9NQ88 270 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 FBXO8Q9NRD0 319 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ABCC13Q9NSE7 274 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 MED9Q9NWA0 146 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 FAM118AQ9NWS6 357 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 KLHL13Q9P2N7 655 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 WDR45Q9Y484 360 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 UBR3Q6ZT12 1888 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ADAMTSL1Q8N6G6 1762 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PAPPA2Q9BXP8 1791 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF487B1APH4 448 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CAPN5O15484 640 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 SRPX2O60687 465 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 GPR37L1O60883 481 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CSTBP04080 98 aaKnown RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 TPOP07202 933 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 OR5AC1P0C628 307 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 MGMTP16455 207 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PFKLP17858 780 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ANXA7P20073 488 aaKnown RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 EDNRAP25101 427 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 G0S2P27469 103 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CHRNB4P30926 498 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CTHP32929 405 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 LHX1P48742 406 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PSMB3P49720 205 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 EPHA5P54756 1037 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ARF6P62330 175 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 MFGE8Q08431 387 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 MAP2K5Q13163 448 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CAMK2BQ13554 666 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PDIA6Q15084 440 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PPA1Q15181 289 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 OR4D1Q15615 310 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CCL15Q16663 113 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TTC32Q5I0X7 151 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PAGE3Q5JUK9 113 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PHF19Q5T6S3 580 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 MARC1Q5VT66 337 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 KIAA0319Q5VV43 1072 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 IL31Q6EBC2 164 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 C12orf54Q6X4T0 127 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TMEM184AQ6ZMB5 413 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 UNC5AQ6ZN44 842 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 KLBQ86Z14 1044 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ADGRF3Q8IZF5 1079 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 BEND7Q8N7W2 519 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 IL17RCQ8NAC3 791 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 OR5AP2Q8NGF4 316 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 OR13C4Q8NGS5 318 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF417Q8TAU3 575 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TMEM163Q8TC26 289 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CASTOR1Q8WTX7 329 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 GPKOWQ92917 476 aaPredicted RBP eCLIP3.41□□□□□ -1.86
USP53-205ENST00000509769 GLYATL1Q969I3 302 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NT5C3BQ969T7 300 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ACTR3CQ9C0K3 210 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 WDCPQ9H6R7 721 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NEUROD4Q9HD90 331 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF331Q9NQX6 463 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF302Q9NR11 478 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TVP23BQ9NYZ1 205 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 SUSD2Q9UGT4 822 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 FBXW11Q9UKB1 542 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PCDHGA2Q9Y5H1 932 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NPFFR2Q9Y5X5 522 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 DLEC1Q9Y238 1755 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NFAT5O94916 1531 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 LOC100509620A0A075B734 347 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 XKRY2A2RUG3 117 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 A8MV72 311 aaPredicted RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms