RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 HRO43593 1189 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 PEBP1P30086 187 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 SGCGQ13326 291 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 GPR50Q13585 617 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 ELOAQ14241 798 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 TUBA3EQ6PEY2 450 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 NACC2Q96BF6 587 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 RNF31Q96EP0 1072 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CNRIP1Q96F85 164 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 TMEM80Q96HE8 168 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 TBX5Q99593 518 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 PLA2G12AQ9BZM1 189 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 C6orf106Q9H6K1 298 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 SLC35C2Q9NQQ7 365 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 SSR3Q9UNL2 185 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 YBX2Q9Y2T7 364 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CCDC182A6NF36 153 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 EPPINO95925 133 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 HMGN2P05204 90 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CHRM4P08173 479 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 AK4P27144 223 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 IGFALSP35858 605 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 MAN2A2P49641 1150 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 FUT5Q11128 374 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 HYAL2Q12891 473 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 GINS1Q14691 196 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 SNAPC1Q16533 368 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 OR6T1Q8NGN1 323 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 PHOSPHO2Q8TCD6 241 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 ZFPM2Q8WW38 1151 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CRELD1Q96HD1 420 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 ZNF354BQ96LW1 612 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 MYADMQ96S97 322 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 NELL2Q99435 816 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 RSPH9Q9H1X1 276 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 MIXL1Q9H2W2 232 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 DDX31Q9H8H2 851 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 SFXN1Q9H9B4 322 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 PHPT1Q9NRX4 125 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CRNNQ9UBG3 495 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 BRWD1Q9NSI6 2320 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 MEN1O00255 615 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 LTB4RQ15722 352 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 PGBD2Q6P3X8 592 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 IL20RBQ6UXL0 311 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 SLC30A8Q8IWU4 369 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 PHC2Q8IXK0 858 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 PIK3R3Q92569 461 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 PBX4Q9BYU1 374 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 GIMAP4Q9NUV9 329 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TXNL4BQ9NX01 149 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 CMAHPQ9Y471 501 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 KLK4Q9Y5K2 254 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 CACNA1CQ13936 2221 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3DA0A087WVF3 549 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3IA0A087WXS9 549 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3EA0A087X179 549 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3KA0A087X1G2 549 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3FA6NER0 549 aaPredicted RBP15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3LB9A6J9 549 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 CSF3P09919 207 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3HP0C7X1 549 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 CCNYL3P0C7X3 344 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TRIM23P36406 574 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 LRRC32Q14392 662 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 LARS2Q15031 903 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 GPAT3Q53EU6 434 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TOR1AIP1Q5JTV8 583 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3GQ6DHY5 549 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3CQ6IPX1 549 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 KIAA1161Q6NSJ0 714 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 PODNL1Q6PEZ8 512 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 LINC00299Q6ZSB3 139 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D3Q8IZP1 549 aaPredicted RBP15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 ACOT4Q8N9L9 421 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 SIMC1Q8NDZ2 872 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 OR4E2Q8NGC2 313 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 OR52P1PQ8NH57 321 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 CCL4L1Q8NHW4 92 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 KAT2AQ92830 837 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 QRFPRQ96P65 431 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 MAPKAP1Q9BPZ7 522 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 FGF22Q9HCT0 170 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 NLKQ9UBE8 527 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 P2RX2Q9UBL9 471 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 ACSL5Q9ULC5 683 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 NDRG2Q9UN36 371 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 A4GNTQ9UNA3 340 aa15.53■□□□□ 0.08
CCDC88B-210ENST00000494566 POM121BA6NF01 834 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 EPOPA6NHQ4 379 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 APODP05090 189 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 SCG5P05408 212 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 CSTF2P33240 577 aaKnown RBP eCLIP15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 FRKP42685 505 aaPredicted RBP15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 PSPHP78330 225 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 DUSP6Q16828 381 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 TIMM50Q3ZCQ8 353 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 ZNF438Q7Z4V0 828 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 KCT2Q8NC54 265 aa15.52■□□□□ 0.08
CCDC88B-210ENST00000494566 SMAP2Q8WU79 429 aaPredicted RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms