RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PDE7AQ13946 482 aa22.58■■□□□ 1.21
UPF3A-209ENST00000492270 XKRXQ6PP77 449 aa22.58■■□□□ 1.21
UPF3A-209ENST00000492270 WDR53Q7Z5U6 358 aaPredicted RBP22.58■■□□□ 1.21
UPF3A-209ENST00000492270 SLC44A2Q8IWA5 706 aaPredicted RBP22.58■■□□□ 1.21
UPF3A-209ENST00000492270 PGM2Q96G03 612 aa22.58■■□□□ 1.21
UPF3A-209ENST00000492270 GNRHR2Q96P88 292 aa22.58■■□□□ 1.21
UPF3A-209ENST00000492270 C1orf50Q9BV19 199 aa22.58■■□□□ 1.21
UPF3A-209ENST00000492270 QPCTLQ9NXS2 382 aa22.58■■□□□ 1.21
UPF3A-209ENST00000492270 PLOD2O00469 737 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 BCKDKO14874 412 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 TM9SF1O15321 606 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 HCN1O60741 890 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 COQ9O75208 318 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 PSMG1O95456 288 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 HSPA4LO95757 839 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 PSG6Q00889 435 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 LRIG3Q6UXM1 1119 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 PACS2Q86VP3 889 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 EID3Q8N140 333 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 OR2L13Q8N349 312 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 PPCDCQ96CD2 204 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 ELP4Q96EB1 424 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 TMEM41AQ96HV5 264 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 PPP3R2Q96LZ3 170 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 COL21A1Q96P44 957 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 ADOQ96SZ5 270 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 OSBPL11Q9BXB4 747 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 UBQLN3Q9H347 655 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 KCNK9Q9NPC2 374 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 DDX18Q9NVP1 670 aaKnown RBP22.57■■□□□ 1.2
UPF3A-209ENST00000492270 C15orf41Q9Y2V0 281 aa22.57■■□□□ 1.2
UPF3A-209ENST00000492270 KLF2Q9Y5W3 355 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-209ENST00000492270 MED12Q93074 2177 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 BIRC5O15392 142 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 TSPAN2O60636 221 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 TBX19O60806 448 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ICOSLGO75144 302 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 SLITRK5O94991 958 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 SERPINE1P05121 402 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 SP5Q6BEB4 398 aaPredicted RBP22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ZNF585AQ6P3V2 769 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 TMEM81Q6P7N7 255 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ANGPTL8Q6UXH0 198 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 LIX1Q8N485 282 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ZNF781Q8N8C0 355 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 EFHD2Q96C19 240 aaPredicted RBP22.56■■□□□ 1.2
UPF3A-209ENST00000492270 SLC35A4Q96G79 324 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ZNF764Q96H86 408 aaPredicted RBP22.56■■□□□ 1.2
UPF3A-209ENST00000492270 C20orf27Q9GZN8 174 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ACKR4Q9NPB9 350 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 KLRF1Q9NZS2 232 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 SH3BP4Q9P0V3 963 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ACAD8Q9UKU7 415 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ACTL7BQ9Y614 415 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 ITPR2Q14571 2701 aa22.56■■□□□ 1.2
UPF3A-209ENST00000492270 PRAMEF25A6NGN4 478 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 OR6C70A6NIJ9 312 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 EFNA1P20827 205 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-209ENST00000492270 AGAP20933 346 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 HTR1EP28566 365 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 PTPN6P29350 595 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 CDK9P50750 372 aaKnown RBP22.55■■□□□ 1.2
UPF3A-209ENST00000492270 ABCE1P61221 599 aaKnown RBP22.55■■□□□ 1.2
UPF3A-209ENST00000492270 ATP6AP1LQ52LC2 224 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 C6orf136Q5SQH8 315 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 SLC30A6Q6NXT4 461 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 LARP4Q71RC2 724 aaKnown RBP eCLIP22.55■■□□□ 1.2
UPF3A-209ENST00000492270 HOMEZQ8IX15 550 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 NEIL3Q8TAT5 605 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 SARAFQ96BY9 339 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 SDCCAG3Q96C92 435 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 OR10H1Q9Y4A9 318 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 HCFC1P51610 2035 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 PCNX3Q9H6A9 2034 aa22.55■■□□□ 1.2
UPF3A-209ENST00000492270 NUP214P35658 2090 aaPredicted RBP22.54■■□□□ 1.2
UPF3A-209ENST00000492270 KIAA1549Q9HCM3 1950 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 TMEM114B3SHH9 223 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 TRAPPC6AO75865 159 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 ZWINTO95229 277 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 CLDN14O95500 239 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 BGNP21810 368 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 IL12BP29460 328 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 GPC1P35052 558 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 ASMTP46597 345 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 NUP107P57740 925 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 PTGR1Q14914 329 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 TIGD3Q6B0B8 471 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 RTL6Q6ICC9 239 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 CROCCP2Q86T23 111 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 FNDC5Q8NAU1 212 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 OR1J4Q8NGS1 313 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 NUDT8Q8WV74 236 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 PPP1R36Q96LQ0 422 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 MAPRE3Q9UPY8 281 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 FAM215AQ9Y5M1 114 aa22.54■■□□□ 1.2
UPF3A-209ENST00000492270 SNPHO15079 494 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 SCAMP2O15127 329 aaKnown RBP22.53■■□□□ 1.2
UPF3A-209ENST00000492270 HPNP05981 417 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 MYZAPP0CAP1 466 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 ACVR2AP27037 513 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms