RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZNF808Q8N4W9 903 aaPredicted RBP16.58■□□□□ 0.24
COL9A3-214ENST00000490398 KRTCAP2Q8N6L1 136 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 EFHD2Q96C19 240 aaPredicted RBP16.58■□□□□ 0.24
COL9A3-214ENST00000490398 PPCDCQ96CD2 204 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 ZNF597Q96LX8 424 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 PPP3R2Q96LZ3 170 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 ADOQ96SZ5 270 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 UBQLN3Q9H347 655 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 FLRT3Q9NZU0 649 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 GTF3C1Q12789 2109 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 EXPH5Q8NEV8 1989 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 TRGV5A0A0B4J1U4 118 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 TMEM114B3SHH9 223 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 E9PLN8 166 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 AQP7O14520 342 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 ICOSLGO75144 302 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 ZWINTO95229 277 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 GDF1P27539 372 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 FRKP42685 505 aaPredicted RBP16.57■□□□□ 0.24
COL9A3-214ENST00000490398 SLC1A6P48664 564 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 MAN2A2P49641 1150 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 TBCELQ5QJ74 424 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 IL23RQ5VWK5 629 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 TMEM198Q66K66 360 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 RTL6Q6ICC9 239 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 PAOXQ6QHF9 649 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 OR7A2PQ8NGA2 310 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 MGARPQ8TDB4 240 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 SLC35A4Q96G79 324 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 ZNF764Q96H86 408 aaPredicted RBP16.57■□□□□ 0.24
COL9A3-214ENST00000490398 COL21A1Q96P44 957 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 PAIP2Q9BPZ3 127 aaKnown RBP16.57■□□□□ 0.24
COL9A3-214ENST00000490398 VKORC1Q9BQB6 163 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 STMN4Q9H169 189 aaPredicted RBP16.57■□□□□ 0.24
COL9A3-214ENST00000490398 LDAHQ9H6V9 325 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 METTL7AQ9H8H3 244 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 TMBIM4Q9HC24 238 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 RYDENQ9NUL5 291 aaKnown RBP16.57■□□□□ 0.24
COL9A3-214ENST00000490398 DDX18Q9NVP1 670 aaKnown RBP16.57■□□□□ 0.24
COL9A3-214ENST00000490398 PNPOQ9NVS9 261 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 TAS2R9Q9NYW1 312 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 C15orf41Q9Y2V0 281 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 NINQ8N4C6 2090 aa16.57■□□□□ 0.24
COL9A3-214ENST00000490398 PCNX1Q96RV3 2341 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 TMEM120BA0PK00 339 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 PRAMEF25A6NGN4 478 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 OR6C70A6NIJ9 312 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 PRSS44E7EML9 344 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 SNX4O95219 450 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 LAMP1P11279 417 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 PTPN6P29350 595 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 MAGOHP61326 146 aaKnown RBP16.56■□□□□ 0.24
COL9A3-214ENST00000490398 BST1Q10588 318 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 GAB1Q13480 694 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 ATP6AP1LQ52LC2 224 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 EIPR1Q53HC9 387 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 TIGD3Q6B0B8 471 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 ZNF585AQ6P3V2 769 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 MTFR2Q6P444 385 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 ANGPTL8Q6UXH0 198 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 RPTNQ6XPR3 784 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 LARP4Q71RC2 724 aaKnown RBP eCLIP16.56■□□□□ 0.24
COL9A3-214ENST00000490398 WDSUB1Q8N9V3 476 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 FNDC5Q8NAU1 212 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 TLCD1Q96CP7 247 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 TUBGCP3Q96CW5 907 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 TMEM41AQ96HV5 264 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 OSBPL11Q9BXB4 747 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 ACKR4Q9NPB9 350 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 EQTNQ9NQ60 294 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 ATP6V1HQ9UI12 483 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 MAPRE3Q9UPY8 281 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 RAP2CQ9Y3L5 183 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 NAV2Q8IVL1 2488 aa16.56■□□□□ 0.24
COL9A3-214ENST00000490398 NCOA6Q14686 2063 aaPredicted RBP16.55■□□□□ 0.24
COL9A3-214ENST00000490398 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 GXYLT2A0PJZ3 443 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 KDM4EB2RXH2 506 aaPredicted RBP16.55■□□□□ 0.24
COL9A3-214ENST00000490398 C19orf84I3L1E1 186 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 SNPHO15079 494 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 SCAMP2O15127 329 aaKnown RBP16.55■□□□□ 0.24
COL9A3-214ENST00000490398 SUSD5O60279 629 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 COQ9O75208 318 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 ERLIN1O75477 346 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 TRAPPC6AO75865 159 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 MYZAPP0CAP1 466 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 G6PDP11413 515 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 CYP4B1P13584 511 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 MASP1P48740 699 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 STX3Q13277 289 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 SP5Q6BEB4 398 aaPredicted RBP16.55■□□□□ 0.24
COL9A3-214ENST00000490398 TMEM81Q6P7N7 255 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 PACS2Q86VP3 889 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 FBXO30Q8TB52 745 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 PHF10Q8WUB8 498 aaKnown RBP16.55■□□□□ 0.24
COL9A3-214ENST00000490398 RNF138Q8WVD3 245 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 ARL8AQ96BM9 186 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 GIMAP5Q96F15 307 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 RTN4RQ9BZR6 473 aa16.55■□□□□ 0.24
COL9A3-214ENST00000490398 TP63Q9H3D4 680 aaPredicted RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms