RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 PLXDC2Q6UX71 529 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 NPSR1Q6W5P4 371 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 OR7G2Q8NG99 324 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 OR4N2Q8NGD1 307 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 RNASE6Q93091 150 aaKnown RBP22.34■■□□□ 1.17
LIME1-206ENST00000487026 VSTM2LQ96N03 204 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 GPATCH1Q9BRR8 931 aaKnown RBP22.34■■□□□ 1.17
LIME1-206ENST00000487026 POLDIP3Q9BY77 421 aaKnown RBP22.34■■□□□ 1.17
LIME1-206ENST00000487026 LIME1Q9H400 295 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 FOLH1BQ9HBA9 442 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 GIMAP4Q9NUV9 329 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 MED13LQ71F56 2210 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 AKAP6Q13023 2319 aa22.34■■□□□ 1.17
LIME1-206ENST00000487026 ACTL6AO96019 429 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 STARP49675 285 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 GALNT18Q6P9A2 607 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 LARP4Q71RC2 724 aaKnown RBP eCLIP22.33■■□□□ 1.172e-7■■□□□ 13.5
LIME1-206ENST00000487026 TRIM42Q8IWZ5 723 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 SAMD14Q8IZD0 417 aaPredicted RBP22.33■■□□□ 1.17
LIME1-206ENST00000487026 C9orf106Q8NAJ2 232 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 SLC35A4Q96G79 324 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 BBS4Q96RK4 519 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 TUBA1CQ9BQE3 449 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 CALHM2Q9HA72 323 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 FBXL2Q9UKC9 423 aa22.33■■□□□ 1.17
LIME1-206ENST00000487026 ANKHD1Q8IWZ3 2542 aaKnown RBP22.33■■□□□ 1.17
LIME1-206ENST00000487026 CCDC151A5D8V7 595 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 MBD3L4A6NDZ8 208 aaPredicted RBP22.32■■□□□ 1.16
LIME1-206ENST00000487026 MBD3L3A6NE82 208 aaPredicted RBP22.32■■□□□ 1.16
LIME1-206ENST00000487026 MBD3L5A6NJ08 208 aaPredicted RBP22.32■■□□□ 1.16
LIME1-206ENST00000487026 TSPAN2O60636 221 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 MYL2P10916 166 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 MPIP34949 423 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 CEBPEQ15744 281 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 PLCZ1Q86YW0 608 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 SLC44A2Q8IWA5 706 aaPredicted RBP22.32■■□□□ 1.16
LIME1-206ENST00000487026 FAM9CQ8IZT9 166 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 LRRN4CLQ8ND94 238 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 MBD3L2Q8NHZ7 208 aaPredicted RBP22.32■■□□□ 1.16
LIME1-206ENST00000487026 EFHD2Q96C19 240 aaPredicted RBP22.32■■□□□ 1.16
LIME1-206ENST00000487026 ERP27Q96DN0 273 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 LRRC46Q96FV0 321 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 OR2B2Q9GZK3 357 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 TAS2R10Q9NYW0 307 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 SENP1Q9P0U3 644 aa22.32■■□□□ 1.16
LIME1-206ENST00000487026 SERTM1A2A2V5 107 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 C17orf51A8MQB3 221 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 PLOD3O60568 738 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 CYP4B1P13584 511 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 CPN1P15169 458 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 TCEA1P23193 301 aaKnown RBP22.31■■□□□ 1.16
LIME1-206ENST00000487026 CTSSP25774 331 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 IL12BP29460 328 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 GCKP35557 465 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 IST1P53990 364 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 RCAN2Q14206 197 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 FBXL19-AS1Q494R0 122 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 ZYG11AQ6WRX3 759 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 SH2D5Q6ZV89 423 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 ZPLD1Q8TCW7 415 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 SHCBP1LQ9BZQ2 653 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 C12orf65Q9H3J6 166 aaKnown RBP22.31■■□□□ 1.16
LIME1-206ENST00000487026 TNFRSF12AQ9NP84 129 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 RASSF1Q9NS23 344 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 SIRT5Q9NXA8 310 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 POLR3HQ9Y535 204 aaPredicted RBP22.31■■□□□ 1.16
LIME1-206ENST00000487026 WIF1Q9Y5W5 379 aa22.31■■□□□ 1.16
LIME1-206ENST00000487026 MYO1GB0I1T2 1018 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 ABCB7O75027 752 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 PROCP04070 461 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 SHBGP04278 402 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 JUNP05412 331 aaKnown RBP22.3■■□□□ 1.16
LIME1-206ENST00000487026 DDCP20711 480 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 KRT20P35900 424 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 FOXF2Q12947 444 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 IMPG1Q17R60 797 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 FLYWCH1Q4VC44 716 aa22.3■■□□□ 1.16
LIME1-206ENST00000487026 CLEC4MQ9H2X3 399 aaPredicted RBP22.3■■□□□ 1.16
LIME1-206ENST00000487026 SETD2Q9BYW2 2564 aaPredicted RBP22.29■■□□□ 1.16
LIME1-206ENST00000487026 MAP1AP78559 2803 aaPredicted RBP22.29■■□□□ 1.16
LIME1-206ENST00000487026 B4DXG7 233 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 EEF1E1-BLOC1S5C9J1V9 151 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 H0Y3Z8 333 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 EEF1E1O43324 174 aaKnown RBP22.29■■□□□ 1.16
LIME1-206ENST00000487026 GLRA3O75311 464 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 NCBP2P52298 156 aaKnown RBP eCLIP22.29■■□□□ 1.162e-18■■□□□ 12.4
LIME1-206ENST00000487026 DGKQP52824 942 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 GFRA1P56159 465 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 ZNF763Q0D2J5 394 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 ZNF155Q12901 538 aaPredicted RBP22.29■■□□□ 1.16
LIME1-206ENST00000487026 EFR3AQ14156 821 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 SH2D4BQ5SQS7 431 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 FAM71E1Q6IPT2 247 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 IFNEQ86WN2 208 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 LINC01560Q8TB33 94 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 CCDC126Q96EE4 140 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 DOCK7Q96N67 2140 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 CCM2LQ9NUG4 571 aaPredicted RBP22.29■■□□□ 1.16
LIME1-206ENST00000487026 TAS2R9Q9NYW1 312 aa22.29■■□□□ 1.16
LIME1-206ENST00000487026 CBLCQ9ULV8 474 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms