RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 IL12BP29460 328 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 RFX3P48380 749 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 RBPJQ06330 500 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 ZNHIT3Q15649 155 aaPredicted RBP13.55□□□□□ -0.24
USP4-212ENST00000486549 OR4F3Q6IEY1 312 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 OGFOD2Q6N063 350 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 SLC22A16Q86VW1 577 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 NUP43Q8NFH3 380 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 OR52N2Q8NGI0 321 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 EFHD2Q96C19 240 aaPredicted RBP13.55□□□□□ -0.24
USP4-212ENST00000486549 COQ8BQ96D53 544 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 MARK4Q96L34 752 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 RILPQ96NA2 401 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 COL21A1Q96P44 957 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 NODALQ96S42 347 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 ADOQ96SZ5 270 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 BHLHE41Q9C0J9 482 aaPredicted RBP13.55□□□□□ -0.24
USP4-212ENST00000486549 DEFB127Q9H1M4 99 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 METTL7AQ9H8H3 244 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 IL1RL2Q9HB29 575 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 C3orf14Q9HBI5 128 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 PROK2Q9HC23 129 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 SIRT3Q9NTG7 399 aaPredicted RBP13.55□□□□□ -0.24
USP4-212ENST00000486549 AIG1Q9NVV5 245 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 SH3BGRL2Q9UJC5 107 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 MAPRE3Q9UPY8 281 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 USH1CQ9Y6N9 552 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 NUP214P35658 2090 aaPredicted RBP13.54□□□□□ -0.24
USP4-212ENST00000486549 COL12A1Q99715 3063 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 EMC8O43402 210 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 SEMA7AO75326 666 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 PDE9AO76083 593 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 IFI6P09912 130 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 SOAT1P35610 550 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 MAGEA5P43359 124 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 MASP1P48740 699 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 C21orf58P58505 322 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 PRR5P85299 388 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 PSG6Q00889 435 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 FOXO1Q12778 655 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 MLC1Q15049 377 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 LSM12Q3MHD2 195 aaKnown RBP13.54□□□□□ -0.24
USP4-212ENST00000486549 SPDYE7PQ495Y7 208 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 KRTCAP3Q53RY4 240 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 CMPK2Q5EBM0 449 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 TBCELQ5QJ74 424 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 C1QL3Q5VWW1 255 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 NUP54Q7Z3B4 507 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 SPATA19Q7Z5L4 167 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 GHDCQ8N2G8 530 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 TMEM251Q8N6I4 163 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 NATD1Q8N6N6 113 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 CEP70Q8NHQ1 597 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 CKAP2Q8WWK9 683 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 OR5P2Q8WZ92 322 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 SLC9A6Q92581 669 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 HGDQ93099 445 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 FAM120BQ96EK7 910 aaKnown RBP13.54□□□□□ -0.24
USP4-212ENST00000486549 CHMP6Q96FZ7 201 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 ZNF597Q96LX8 424 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 MAGEB18Q96M61 343 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 MS4A4EQ96PG1 132 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 OR52B2Q96RD2 323 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 SECISBP2Q96T21 854 aaKnown RBP13.54□□□□□ -0.24
USP4-212ENST00000486549 YIPF4Q9BSR8 244 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 LMF2Q9BU23 707 aaKnown RBP13.54□□□□□ -0.24
USP4-212ENST00000486549 CXorf36Q9H7Y0 433 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 Q9N2J8 555 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 ZCCHC3Q9NUD5 404 aaKnown RBP13.54□□□□□ -0.24
USP4-212ENST00000486549 KLRF1Q9NZS2 232 aa13.54□□□□□ -0.24
USP4-212ENST00000486549 BOKQ9UMX3 212 aaPredicted RBP13.54□□□□□ -0.24
USP4-212ENST00000486549 POLEQ07864 2286 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 USP9XQ93008 2570 aaPredicted RBP13.53□□□□□ -0.24
USP4-212ENST00000486549 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 TRGV8A0A0C4DH27 118 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 OR6C70A6NIJ9 312 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 C9JVG2 144 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 ZNF195O14628 629 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 ANKRD28O15084 1053 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 TSPAN2O60636 221 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 GLSO94925 669 aaPredicted RBP13.53□□□□□ -0.24
USP4-212ENST00000486549 GABRA3P34903 492 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 CASP3P42574 277 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 KIR3DL1P43629 444 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 CLNS1AP54105 237 aaKnown RBP13.53□□□□□ -0.24
USP4-212ENST00000486549 UFM1P61960 85 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 GAB1Q13480 694 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 TP53BP2Q13625 1128 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 HSP90B2PQ58FF3 399 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 TMEM198Q66K66 360 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 RGS9BPQ6ZS82 235 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 CAMKMTQ7Z624 323 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 CLECL1Q8IZS7 167 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 OR5AK3PQ8NH89 298 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 GPR151Q8TDV0 419 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 ACTRT2Q8TDY3 377 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 PIK3R3Q92569 461 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 JADE3Q92613 823 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 TMCO6Q96DC7 493 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 GIMAP5Q96F15 307 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms