RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 STARD5Q9NSY2 213 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 VPS54Q9P1Q0 977 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 NARFQ9UHQ1 456 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 LEF1Q9UJU2 399 aaPredicted RBP1.94□□□□□ -2.1
VPS50-216ENST00000484954 LIPT1Q9Y234 373 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 LTBP1Q14766 1721 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 RLFQ13129 1914 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 PTPRUQ92729 1446 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 ZNF320A2RRD8 509 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 WWP2O00308 870 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 SLC28A1O00337 649 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 STX6O43752 255 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 LRP3O75074 770 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 ALOX5P09917 674 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 UROSP10746 265 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 UGT1A3P35503 534 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 METAP1P53582 386 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 NME5P56597 212 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 LINC00315P59091 139 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 SHROOM1Q2M3G4 852 aaPredicted RBP1.93□□□□□ -2.1
VPS50-216ENST00000484954 TFDP3Q5H9I0 405 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 AGBL2Q5U5Z8 902 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 NKAIN2Q5VXU1 208 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 TSEN54Q7Z6J9 526 aaKnown RBP1.93□□□□□ -2.1
VPS50-216ENST00000484954 CADM2Q8N3J6 435 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 CHCHD4Q8N4Q1 142 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 DLX4Q92988 240 aaPredicted RBP1.93□□□□□ -2.1
VPS50-216ENST00000484954 NOL4LQ96MY1 436 aaPredicted RBP1.93□□□□□ -2.1
VPS50-216ENST00000484954 OR51J1Q9H342 316 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 COPS7BQ9H9Q2 264 aaPredicted RBP1.93□□□□□ -2.1
VPS50-216ENST00000484954 ZCCHC3Q9NUD5 404 aaKnown RBP1.93□□□□□ -2.1
VPS50-216ENST00000484954 ERVK-18Q9QC07 812 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 BARX2Q9UMQ3 279 aaPredicted RBP1.93□□□□□ -2.1
VPS50-216ENST00000484954 ZNF175Q9Y473 711 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 NPC1L1Q9UHC9 1359 aa1.93□□□□□ -2.1
VPS50-216ENST00000484954 TRIM49D1C9J1S8 452 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 CACNB4O00305 520 aaPredicted RBP1.92□□□□□ -2.1
VPS50-216ENST00000484954 SLC7A4O43246 635 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 CA11O75493 328 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 AKAP3O75969 853 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 IGSF6O95976 241 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 SFTPBP07988 381 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 CYP11B1P15538 503 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 NPY2RP49146 381 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 PPOXP50336 477 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 SGSHP51688 502 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 NLRP11P59045 1033 aaKnown RBP1.92□□□□□ -2.1
VPS50-216ENST00000484954 BCL2L1Q07817 233 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 ZNF630Q2M218 657 aaPredicted RBP1.92□□□□□ -2.1
VPS50-216ENST00000484954 ARMC3Q5W041 872 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 CXCL17Q6UXB2 119 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 LINC01555Q8NAE3 123 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 BCL2L2Q92843 193 aaPredicted RBP1.92□□□□□ -2.1
VPS50-216ENST00000484954 C18orf25Q96B23 403 aaPredicted RBP1.92□□□□□ -2.1
VPS50-216ENST00000484954 DEFB118Q96PH6 123 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 IL4I1Q96RQ9 567 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 TBX15Q96SF7 602 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 GRPEL1Q9HAV7 217 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 KCNMB3Q9NPA1 279 aa1.92□□□□□ -2.1
VPS50-216ENST00000484954 EXOSC3Q9NQT5 275 aaKnown RBP1.92□□□□□ -2.1
VPS50-216ENST00000484954 PURGQ9UJV8 347 aaKnown RBP1.92□□□□□ -2.1
VPS50-216ENST00000484954 PRG3Q9Y2Y8 225 aaPredicted RBP1.92□□□□□ -2.1
VPS50-216ENST00000484954 HMGB1P1B2RPK0 211 aaPredicted RBP1.91□□□□□ -2.1
VPS50-216ENST00000484954 H0Y626 953 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 TIMP1P01033 207 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 SERPINF2P08697 491 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 SDC1P18827 310 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 CTNNB1P35222 781 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 PITPNBP48739 271 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 SLC26A2P50443 739 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 LRRC63Q05C16 580 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 EIF2B1Q14232 305 aaKnown RBP1.91□□□□□ -2.1
VPS50-216ENST00000484954 ZNF699Q32M78 642 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 AARDQ4LEZ3 155 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 PNCKQ6P2M8 343 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 BNIPLQ7Z465 357 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 SYVN1Q86TM6 617 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 SERPINA12Q8IW75 414 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 BBS1Q8NFJ9 593 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 FBXO30Q8TB52 745 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 ARNTL2Q8WYA1 636 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 ADPGKQ9BRR6 497 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 SLC25A39Q9BZJ4 359 aaPredicted RBP1.91□□□□□ -2.1
VPS50-216ENST00000484954 MBD2Q9UBB5 411 aa1.91□□□□□ -2.1
VPS50-216ENST00000484954 MRPS2Q9Y399 296 aaKnown RBP1.91□□□□□ -2.1
VPS50-216ENST00000484954 METP08581 1390 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 IGKV6-21A0A0C4DH24 114 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 LRIT2A6NDA9 550 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 H3BMH7 237 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 DFNA5O60443 496 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 MMP23AO75900 390 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 HPNP05981 417 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 PGK2P07205 417 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 RFC2P35250 354 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 TCF7P36402 384 aaPredicted RBP1.9□□□□□ -2.11
VPS50-216ENST00000484954 DAZ2Q13117 558 aaKnown RBP1.9□□□□□ -2.11
VPS50-216ENST00000484954 ORC2Q13416 577 aaPredicted RBP1.9□□□□□ -2.11
VPS50-216ENST00000484954 PDE7AQ13946 482 aa1.9□□□□□ -2.11
VPS50-216ENST00000484954 CAMK4Q16566 473 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms