RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SENP1Q9P0U3 644 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 ZNF629Q9UEG4 869 aaPredicted RBP19.62■□□□□ 0.73
USP40-215ENST00000484528 EMCNQ9ULC0 261 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 EXO1Q9UQ84 846 aaKnown RBP19.62■□□□□ 0.73
USP40-215ENST00000484528 STK38LQ9Y2H1 464 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 PCNX3Q9H6A9 2034 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 MBD3L4A6NDZ8 208 aaPredicted RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 MBD3L3A6NE82 208 aaPredicted RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 OR6C70A6NIJ9 312 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 MBD3L5A6NJ08 208 aaPredicted RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 C17orf51A8MQB3 221 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 EEF1E1-BLOC1S5C9J1V9 151 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 H0Y3Z8 333 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 UBFD1O14562 309 aaKnown RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 EEF1E1O43324 174 aaKnown RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 ERN1O75460 977 aaKnown RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 ACTL6AO96019 429 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 ANXA4P09525 319 aaPredicted RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 TACR1P25103 407 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 GCKP35557 465 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 SLCO1A2P46721 670 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 IST1P53990 364 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 RCAN2Q14206 197 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 HEPACAMQ14CZ8 416 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 PRSS53Q2L4Q9 553 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 SPDYAQ5MJ70 313 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 OR5M10Q6IEU7 315 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 FAM9CQ8IZT9 166 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 CEP112Q8N8E3 955 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 OR7G2Q8NG99 324 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 MBD3L2Q8NHZ7 208 aaPredicted RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 ACMSDQ8TDX5 336 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 TMCO6Q96DC7 493 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 LRRC46Q96FV0 321 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 BBS4Q96RK4 519 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 TUBA1CQ9BQE3 449 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 TXLNGYQ9BZA5 131 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 OR2B2Q9GZK3 357 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 CLEC4MQ9H2X3 399 aaPredicted RBP19.61■□□□□ 0.73
USP40-215ENST00000484528 FBXL2Q9UKC9 423 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 ACANP16112 2415 aa19.61■□□□□ 0.73
USP40-215ENST00000484528 A0A1W2PPM1 405 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 CBR3O75828 277 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 GSTA1P08263 222 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 CYP4B1P13584 511 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 IL12BP29460 328 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 KRT20P35900 424 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 STARP49675 285 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 DGKQP52824 942 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 RIPPLY3P57055 190 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 ZNF155Q12901 538 aaPredicted RBP19.6■□□□□ 0.73
USP40-215ENST00000484528 FBXL19-AS1Q494R0 122 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 LARP4Q71RC2 724 aaKnown RBP eCLIP19.6■□□□□ 0.73
USP40-215ENST00000484528 IFNEQ86WN2 208 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 PLCZ1Q86YW0 608 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 TRIM42Q8IWZ5 723 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 OR4N2Q8NGD1 307 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 KIF18AQ8NI77 898 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 EFHD2Q96C19 240 aaPredicted RBP19.6■□□□□ 0.73
USP40-215ENST00000484528 C11orf24Q96F05 449 aaPredicted RBP19.6■□□□□ 0.73
USP40-215ENST00000484528 SLC35A4Q96G79 324 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 FETUBQ9UGM5 382 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 WIF1Q9Y5W5 379 aa19.6■□□□□ 0.73
USP40-215ENST00000484528 CCDC151A5D8V7 595 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 KIF2AO00139 706 aaPredicted RBP19.59■□□□□ 0.73
USP40-215ENST00000484528 TSPAN2O60636 221 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 BCAS2O75934 225 aaPredicted RBP19.59■□□□□ 0.73
USP40-215ENST00000484528 JUNP05412 331 aaKnown RBP19.59■□□□□ 0.73
USP40-215ENST00000484528 MYL2P10916 166 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 CD1EP15812 388 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 CTSSP25774 331 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 C2orf80Q0P641 193 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 FOXF2Q12947 444 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 GALNT18Q6P9A2 607 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 SLC44A2Q8IWA5 706 aaPredicted RBP19.59■□□□□ 0.73
USP40-215ENST00000484528 SAMD14Q8IZD0 417 aaPredicted RBP19.59■□□□□ 0.73
USP40-215ENST00000484528 CALHM2Q9HA72 323 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 RASSF1Q9NS23 344 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 CCM2LQ9NUG4 571 aaPredicted RBP19.59■□□□□ 0.73
USP40-215ENST00000484528 TAS2R10Q9NYW0 307 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 CBLCQ9ULV8 474 aa19.59■□□□□ 0.73
USP40-215ENST00000484528 POLR3HQ9Y535 204 aaPredicted RBP19.59■□□□□ 0.73
USP40-215ENST00000484528 A6NNC1 897 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 G3V2L1 256 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 ABCB7O75027 752 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 TMIGD3P0DMS9 266 aaPredicted RBP19.58■□□□□ 0.72
USP40-215ENST00000484528 ZNF763Q0D2J5 394 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 CEBPEQ15744 281 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 IMPG1Q17R60 797 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 SH2D4BQ5SQS7 431 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 ENPP6Q6UWR7 440 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 ZYG11AQ6WRX3 759 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 LRRN4CLQ8ND94 238 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 ZPLD1Q8TCW7 415 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 FAM222BQ8WU58 562 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 ERP27Q96DN0 273 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 SHCBP1LQ9BZQ2 653 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 DCDC2Q9UHG0 476 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 DKKL1Q9UK85 242 aa19.58■□□□□ 0.72
USP40-215ENST00000484528 OR10H1Q9Y4A9 318 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms