RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZNF629Q9UEG4 869 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 EXO1Q9UQ84 846 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 ACANP16112 2415 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 A0A1W2PPM1 405 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 B4DXG7 233 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 TSPAN2O60636 221 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 ERN1O75460 977 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 CTAG2O75638 210 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 BCAS2O75934 225 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 ACTL6AO96019 429 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 IL2RAP01589 272 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 DNAJA1P31689 397 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 PRSS53Q2L4Q9 553 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 SH2D5Q6ZV89 423 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 SAMD14Q8IZD0 417 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 CCNYL1Q8N7R7 359 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 LRRN4CLQ8ND94 238 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 OR7G2Q8NG99 324 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 RNASE6Q93091 150 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 TRIB1Q96RU8 372 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 ADOQ96SZ5 270 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 FOLH1BQ9HBA9 442 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 MID1IP1Q9NPA3 183 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 WIF1Q9Y5W5 379 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 ABCA4P78363 2273 aa17.1■□□□□ 0.33
CCDC88B-206ENST00000473405 MPDZO75970 2070 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 PLOD3O60568 738 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 CBR3O75828 277 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 PROCP04070 461 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 ANXA4P09525 319 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 CPN1P15169 458 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 KIR2DL3P43628 341 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 SLCO1A2P46721 670 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 GFRA1P56159 465 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 BTKQ06187 659 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 ZNF763Q0D2J5 394 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 SF3B4Q15427 424 aaKnown RBP eCLIP17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 ERCC6LQ2NKX8 1250 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 ZYG11AQ6WRX3 759 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 FRMD7Q6ZUT3 714 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 C9orf106Q8NAJ2 232 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 ZPLD1Q8TCW7 415 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 GPATCH1Q9BRR8 931 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 G6PC3Q9BUM1 346 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 CALHM2Q9HA72 323 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 TNFRSF12AQ9NP84 129 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 GIMAP4Q9NUV9 329 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 DNAJB12Q9NXW2 375 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 DCDC2Q9UHG0 476 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 FBXL2Q9UKC9 423 aa17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 PRRC2AP48634 2157 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-206ENST00000473405 FAM221AA4D161 298 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 CCDC151A5D8V7 595 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 C17orf51A8MQB3 221 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 ABCB7O75027 752 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 GLRA3O75311 464 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 REM1O75628 298 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 SHBGP04278 402 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 MYL2P10916 166 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 DDCP20711 480 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 GSTM5P46439 218 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 GAS1P54826 345 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 FLYWCH1Q4VC44 716 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 ADGRE4PQ86SQ3 457 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 FAM9CQ8IZT9 166 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 OR4N2Q8NGD1 307 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 OR14L1PQ8NHC6 308 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 TMCO6Q96DC7 493 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 TUBA1CQ9BQE3 449 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 SHCBP1LQ9BZQ2 653 aa17.08■□□□□ 0.32
CCDC88B-206ENST00000473405 MYO1GB0I1T2 1018 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 CTSSP25774 331 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 MPIP34949 423 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 PEX19P40855 299 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 AGFG1P52594 562 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 PSPHP78330 225 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 RCAN2Q14206 197 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 SPDYAQ5MJ70 313 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 FAM71E1Q6IPT2 247 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 LARP4Q71RC2 724 aaKnown RBP eCLIP17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 TRIM46Q7Z4K8 759 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 IFNEQ86WN2 208 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 PLCZ1Q86YW0 608 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 CNPY4Q8N129 248 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 CDC26Q8NHZ8 85 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 RDH11Q8TC12 318 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 EFHD2Q96C19 240 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 CCDC126Q96EE4 140 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 LIME1Q9H400 295 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 MYNNQ9NPC7 610 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 RASSF1Q9NS23 344 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 TAS2R10Q9NYW0 307 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 JKAMPQ9P055 326 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 SENP1Q9P0U3 644 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 CBLCQ9ULV8 474 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 PCNX3Q9H6A9 2034 aa17.07■□□□□ 0.32
CCDC88B-206ENST00000473405 A6NNC1 897 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 PLIN3O60664 434 aa17.06■□□□□ 0.32
CCDC88B-206ENST00000473405 PSMG1O95456 288 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms