RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CBX3Q13185 183 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 ZNF542PQ5EBM4 170 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 SLC30A6Q6NXT4 461 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 C1orf94Q6P1W5 598 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 USP30Q70CQ3 517 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 OR52I1Q8NGK6 324 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 GATAD2BQ8WXI9 593 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 CDS1Q92903 461 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 GIMAP5Q96F15 307 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 ZNF582Q96NG8 517 aaPredicted RBP17.9■□□□□ 0.46
VIM-203ENST00000469543 BCL2L10Q9HD36 194 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 NDOR1Q9UHB4 597 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 KCNK2O95069 426 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 ATXN8OSP0DMR3 200 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 POLR2CP19387 275 aaPredicted RBP17.89■□□□□ 0.45
VIM-203ENST00000469543 FUT1P19526 365 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 CMPK1P30085 196 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 AHRP35869 848 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 SRSF5Q13243 272 aaKnown RBP17.89■□□□□ 0.45
VIM-203ENST00000469543 TRMT12Q53H54 448 aaKnown RBP17.89■□□□□ 0.45
VIM-203ENST00000469543 ZNF761Q86XN6 746 aaPredicted RBP17.89■□□□□ 0.45
VIM-203ENST00000469543 NANOGP1Q8N7R0 232 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 PRRC1Q96M27 445 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 SDHCQ99643 169 aaPredicted RBP17.89■□□□□ 0.45
VIM-203ENST00000469543 SAP130Q9H0E3 1048 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 SRMSQ9H3Y6 488 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 RPL36Q9Y3U8 105 aaKnown RBP17.89■□□□□ 0.45
VIM-203ENST00000469543 ZNF780BQ9Y6R6 833 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 A8MU76 341 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 LDB3O75112 727 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 RASGRP1O95267 797 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 DLGAP3O95886 979 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 GPR4P46093 362 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 ATAT1Q5SQI0 421 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 NUDT18Q6ZVK8 323 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 MFSD9Q8NBP5 474 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 BMFQ96LC9 184 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 GIMAP4Q9NUV9 329 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 FBXO34Q9NWN3 711 aa17.89■□□□□ 0.45
VIM-203ENST00000469543 LINC00854A0A1B0GVQ3 168 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 ATP6V1G1O75348 118 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 CLEC2LP0C7M8 214 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 SOX18P35713 384 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 HYAL1Q12794 435 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 C16orf62Q7Z3J2 963 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 PHC2Q8IXK0 858 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 C9orf43Q8TAL5 461 aaPredicted RBP17.88■□□□□ 0.45
VIM-203ENST00000469543 BBS10Q8TAM1 723 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 TM9SF4Q92544 642 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 ZNF764Q96H86 408 aaPredicted RBP17.88■□□□□ 0.45
VIM-203ENST00000469543 TRNT1Q96Q11 434 aaKnown RBP17.88■□□□□ 0.45
VIM-203ENST00000469543 OR2M4Q96R27 311 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 STARD5Q9NSY2 213 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 EMC8O43402 210 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 PIP5K1CO60331 668 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 SLC2A10O95528 541 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 PRR5P85299 388 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 CDK5Q00535 292 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 RUNX2Q13950 521 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 NCF4Q15080 339 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 MTSS1LQ765P7 747 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 TMEM255BQ8WV15 326 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 C10orf90Q96M02 699 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 TM9SF2Q99805 663 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 PCDHGB6Q9Y5F9 930 aa17.88■□□□□ 0.45
VIM-203ENST00000469543 TDRD6O60522 2096 aaKnown RBP17.87■□□□□ 0.45
VIM-203ENST00000469543 NPIPA5A0A0B4J1W7 369 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 A0A0G2JPF8 293 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 GSAPA4D1B5 854 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 FAM170BA6NMN3 283 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 HNRNPCL2B2RXH8 293 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 HNRNPCL3B7ZW38 293 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 NPIPA7E9PJI5 369 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 NPIPA8P0DM63 369 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 HNRNPCL4P0DMR1 293 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 PIPP12273 146 aaPredicted RBP17.87■□□□□ 0.45
VIM-203ENST00000469543 TNFSF8P32971 234 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 EFNB1P98172 346 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 ENTPD8Q5MY95 495 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 TMEM201Q5SNT2 666 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 PPP2R2DQ66LE6 453 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 ZNF730Q6ZMV8 503 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 LHFPL3Q86UP9 236 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 OR5T3Q8NGG3 340 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 FGF11Q92914 225 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 SIPA1Q96FS4 1042 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 RAB11FIP5Q9BXF6 653 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 CAPN10Q9HC96 672 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 CHCHD3Q9NX63 227 aaKnown RBP17.87■□□□□ 0.45
VIM-203ENST00000469543 COLEC10Q9Y6Z7 277 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 HYAL3O43820 417 aaPredicted RBP17.87■□□□□ 0.45
VIM-203ENST00000469543 AZGP1P25311 298 aaKnown RBP17.87■□□□□ 0.45
VIM-203ENST00000469543 SMIM11AP58511 58 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 RHAGQ02094 409 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 INSL4Q14641 139 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 TMEM64Q6YI46 380 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 PAQR7Q86WK9 346 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 FAM26EQ8N5C1 309 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 SYT14Q8NB59 555 aa17.87■□□□□ 0.45
VIM-203ENST00000469543 GPR151Q8TDV0 419 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms