RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CHERPQ8IWX8 916 aaKnown RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 GPALPP1Q8IXQ4 340 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 CYP4Z2PQ8N1L4 340 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 TMEM156Q8N614 296 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ZFP62Q8NB50 900 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 PDPRQ8NCN5 879 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 SRFBP1Q8NEF9 429 aaKnown RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 C7orf57Q8NEG2 295 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 C16orf52Q8NHV5 167 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 AGAP11Q8TF27 550 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 PHF10Q8WUB8 498 aaKnown RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 DAZLQ92904 295 aaKnown RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 NCLNQ969V3 563 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 UBXN10Q96LJ8 280 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 QRFPRQ96P65 431 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 KRT12Q99456 494 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 GPR22Q99680 433 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 RBBP8Q99708 897 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 CPNE1Q99829 537 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 VKORC1Q9BQB6 163 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 CCDC77Q9BR77 488 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ERP44Q9BS26 406 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 EFCAB11Q9BUY7 163 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ROGDIQ9GZN7 287 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 COPS7BQ9H9Q2 264 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 CAB39LQ9H9S4 337 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ADAP2Q9NPF8 381 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 PNO1Q9NRX1 252 aaKnown RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 WWOXQ9NZC7 414 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ZNF223Q9UK11 482 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 PTBP2Q9UKA9 531 aaKnown RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 ITGB1BP2Q9UKP3 347 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 FBXW2Q9UKT8 454 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ZNF490Q9ULM2 529 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 DAPP1Q9UN19 280 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 YARS2Q9Y2Z4 477 aaKnown RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 CLDN16Q9Y5I7 305 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 COX11Q9Y6N1 276 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 A0A0G2JN53 185 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 TCRBV9S1A1TA0A576 114 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 FAM159BA6NKW6 160 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 TFECO14948 347 aaPredicted RBP6.71□□□□□ -1.34
USP54-208ENST00000461520 PHGDHO43175 533 aaKnown RBP6.71□□□□□ -1.34
USP54-208ENST00000461520 PEX1O43933 1283 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 CTNSO60931 367 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 PIAS1O75925 651 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 SPRP35270 261 aaPredicted RBP6.71□□□□□ -1.34
USP54-208ENST00000461520 CASP2P42575 452 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 HSPA7P48741 367 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 SSR4P51571 173 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 HNRNPFP52597 415 aaKnown RBP6.71□□□□□ -1.34
USP54-208ENST00000461520 C21orf58P58505 322 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 RAB10P61026 200 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 HSF1Q00613 529 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 SERTAD2Q14140 314 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 DOC2AQ14183 400 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 E2F2Q14209 437 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 EFTUD2Q15029 972 aaKnown RBP eCLIP6.71□□□□□ -1.34
USP54-208ENST00000461520 OR4D1Q15615 310 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 XKR6Q5GH73 641 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 ZNF362Q5T0B9 420 aaPredicted RBP6.71□□□□□ -1.34
USP54-208ENST00000461520 GRTP1Q5TC63 336 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 C3orf62Q6ZUJ4 267 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 LRRC70Q7Z2Q7 622 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 SPATA6LQ8N4H0 392 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 SNX31Q8N9S9 440 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 FAM47BQ8NA70 645 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 MORN4Q8NDC4 146 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 SPATA4Q8NEY3 305 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 OR8K3Q8NH51 312 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 STAG3L4Q8TBR4 150 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 FAM57AQ8TBR7 257 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 UBE2E3Q969T4 207 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 KIAA1191Q96A73 305 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 MTFMTQ96DP5 389 aaKnown RBP6.71□□□□□ -1.34
USP54-208ENST00000461520 LURAP1Q96LR2 239 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 DMRTA2Q96SC8 542 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 AIFM2Q9BRQ8 373 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 TBCDQ9BTW9 1192 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 LYRM4Q9HD34 91 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 SAYSD1Q9NPB0 183 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 CD274Q9NZQ7 290 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 TNFRSF18Q9Y5U5 241 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 CLCA3PQ9Y6N3 262 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 PCNX1Q96RV3 2341 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 MTORP42345 2549 aa6.71□□□□□ -1.34
USP54-208ENST00000461520 TACC2O95359 2948 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 A0A1B0GTH9 108 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 A8MVJ9 347 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 ADAM10O14672 748 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 MGST3O14880 152 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 RAD51CO43502 376 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 HS6ST1O60243 411 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 PRKNO60260 465 aaPredicted RBP6.7□□□□□ -1.34
USP54-208ENST00000461520 CCNT2O60583 730 aaKnown RBP6.7□□□□□ -1.34
USP54-208ENST00000461520 OR2J2O76002 312 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 C1QAP02745 245 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 S100BP04271 92 aaPredicted RBP6.7□□□□□ -1.34
USP54-208ENST00000461520 TUBB4AP04350 444 aa6.7□□□□□ -1.34
USP54-208ENST00000461520 IFNA16P05015 189 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms