RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SLC35B2Q8TB61 432 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GPX8Q8TED1 209 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 DUSP19Q8WTR2 217 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM222BQ8WU58 562 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GTF2H4Q92759 462 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM186Q96B77 213 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 HAVCR1Q96D42 359 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ECHDC3Q96DC8 303 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 MISP3Q96FF7 219 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FAHD2AQ96GK7 314 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC45A3Q96JT2 553 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 KLHL15Q96M94 604 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PARK7Q99497 189 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GPR20Q99678 358 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TCEAL7Q9BRU2 100 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 BTBD10Q9BSF8 475 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TUBB6Q9BUF5 446 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ROGDIQ9GZN7 287 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 EGLN1Q9GZT9 426 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 OR2AG1Q9H205 316 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 RIOX1Q9H6W3 641 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 AUNIPQ9H7T9 357 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 RPF1Q9H9Y2 349 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PAK6Q9NQU5 681 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ST3GAL5Q9UNP4 418 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 DRG1Q9Y295 367 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PLEKHA6Q9Y2H5 1048 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 REXO2Q9Y3B8 237 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 LYVE1Q9Y5Y7 322 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GBF1Q92538 1859 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 A0A0G2JLL6 359 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NPIPB15A6NHN6 443 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PP2D1A8MPX8 630 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 H3BMM5 538 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 H3BQ06 376 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 I3L4J1 428 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 WWP2O00308 870 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 CFLARO15519 480 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FLRT2O43155 660 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 DCXO43602 365 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 MFAP3LO75121 409 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GLRA3O75311 464 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GLCEO94923 617 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SLCO2B1O94956 709 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SNAI1O95863 264 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SRPRAP08240 638 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 HOXC4P09017 264 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PFKFB1P16118 471 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GLDCP23378 1020 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 CDKN1AP38936 164 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NOVP48745 357 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ARRB1P49407 418 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 COMPP49747 757 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 RBP2P50120 134 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 KCNQ1P51787 676 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PTTG1IPP53801 180 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 HERVK_113P63132 956 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 DMWDQ09019 674 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ILKQ13418 452 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 BFSP2Q13515 415 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 BOP1Q14137 746 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ACOX1Q15067 660 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TRAM1Q15629 374 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NPY5RQ15761 445 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SGCBQ16585 318 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TAZQ16635 292 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NDUFAF6Q330K2 333 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ZBED5Q49AG3 693 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PDLIM3Q53GG5 364 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PLEKHS1Q5SXH7 462 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 KCTD8Q6ZWB6 473 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF767PQ75MW2 155 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC16A14Q7RTX9 510 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC16A13Q7RTY0 426 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 C16orf62Q7Z3J2 963 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 HAUS6Q7Z4H7 955 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PRRT2Q7Z6L0 340 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PHF13Q86YI8 300 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC35F6Q8N357 371 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SVOPLQ8N434 492 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 KYQ8NBH2 561 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 COLGALT1Q8NBJ5 622 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 DBF4BQ8NFT6 615 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GRHL3Q8TE85 626 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 C16orf78Q8WTQ4 265 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 P2RX5Q93086 422 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 L3HYPDHQ96EM0 354 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 RNF2Q99496 336 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TMED9Q9BVK6 235 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ILKAPQ9H0C8 392 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 MBNL1Q9NR56 388 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ACOXLQ9NUZ1 547 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF701Q9NV72 531 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NDUFAF4Q9P032 175 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 GCNT4Q9P109 453 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 RSL24D1Q9UHA3 163 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 KCNG2Q9UJ96 466 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FBXL3Q9UKT7 428 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TBC1D24Q9ULP9 559 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms