RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 RAD21L1Q9H4I0 556 aa10.71□□□□□ -0.69
SCN9A-204ENST00000452182 EQTNQ9NQ60 294 aa10.71□□□□□ -0.69
SCN9A-204ENST00000452182 GPR83Q9NYM4 423 aa10.71□□□□□ -0.69
SCN9A-204ENST00000452182 PCDHGB3Q9Y5G1 929 aa10.71□□□□□ -0.69
SCN9A-204ENST00000452182 PCDHGA9Q9Y5G4 932 aaKnown RBP10.71□□□□□ -0.69
SCN9A-204ENST00000452182 MGAQ8IWI9 3026 aa10.71□□□□□ -0.7
SCN9A-204ENST00000452182 C15orf38-AP3S2A0A0A6YYH1 394 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 EVPLLA8MZ36 301 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ITGA10O75578 1167 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 OR2J2O76002 312 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 UNC5CO95185 931 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 CBX6O95503 412 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ALOX5P09917 674 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 T-ENOLP0DO92 83 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ACP2P11117 423 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ESRRAP11474 423 aaPredicted RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 BMP2P12643 396 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 NAGAP17050 411 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 TRHRP34981 398 aaPredicted RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 NUDT2P50583 147 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 NR0B1P51843 470 aaKnown RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 NRG3P56975 720 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 CORO7P57737 925 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ART3Q13508 389 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 RGNQ15493 299 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 CYP27C1Q4G0S4 372 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ABHD17BQ5VST6 288 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 NANOGP8Q6NSW7 305 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 IGFL2Q6UWQ7 119 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ISLR2Q6UXK2 745 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 NPSR1Q6W5P4 371 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ARPINQ7Z6K5 226 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 RNF130Q86XS8 419 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 DND1Q8IYX4 353 aaKnown RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 SIRT6Q8N6T7 355 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 OR8J3Q8NGG0 315 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 SLC22A8Q8TCC7 542 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ADAMTS15Q8TE58 950 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 THAP3Q8WTV1 239 aaPredicted RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 AURKBQ96GD4 344 aaPredicted RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 LMF1Q96S06 567 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 RASL10BQ96S79 203 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 SMAD5Q99717 465 aaKnown RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 CPPED1Q9BRF8 314 aaPredicted RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 GPATCH1Q9BRR8 931 aaKnown RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 RNF32Q9H0A6 362 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 SERHL2Q9H4I8 314 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 CDCP1Q9H5V8 836 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 NANOGQ9H9S0 305 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 IL1RL2Q9HB29 575 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 Q9N2J8 555 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 THUMPD1Q9NXG2 353 aaKnown RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.7□□□□□ -0.7
SCN9A-204ENST00000452182 PCDHGB7Q9Y5F8 929 aa10.7□□□□□ -0.7
SCN9A-204ENST00000452182 A6NL46 340 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 WWP2O00308 870 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 NME6O75414 186 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 UBOX5O94941 541 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 NADKO95544 446 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 C1QCP02747 245 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 ALPPP05187 535 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 SLC6A2P23975 617 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 KHKP50053 298 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 RPS26P62854 115 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 MFAP5Q13361 173 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 DUSP5Q16690 384 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 AP1ARQ63HQ0 302 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 B3GNTL1Q67FW5 361 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 FCRLBQ6BAA4 426 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 ANGPTL8Q6UXH0 198 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 SLC44A2Q8IWA5 706 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 GPR151Q8TDV0 419 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 SLC9A6Q92581 669 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 SLC35A4Q96G79 324 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 OR7D2Q96RA2 312 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 OR51I1Q9H343 314 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 IKZF5Q9H5V7 419 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 TRIM45Q9H8W5 580 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 LIN28AQ9H9Z2 209 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 NDE1Q9NXR1 346 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 STMN3Q9NZ72 180 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 ABI3Q9P2A4 366 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 MKRN2OSH3BPM6 223 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 HMGN4O00479 90 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 MAN1A2O60476 641 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 ZNF354AO60765 605 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 AK1P00568 194 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 GUSBP08236 651 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 ABCD3P28288 659 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 GABRA3P34903 492 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 PIGAP37287 484 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 CPA2P48052 419 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 TMED10P49755 219 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 SSR4P51571 173 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 POLE2P56282 527 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 RHDQ02161 417 aa10.69□□□□□ -0.7
SCN9A-204ENST00000452182 GABPB1Q06547 395 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 CAPRIN1Q14444 709 aaKnown RBP10.69□□□□□ -0.7
SCN9A-204ENST00000452182 ST3GAL2Q16842 350 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms