RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 NKX3-2P78367 333 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 AGAP6Q5VW22 663 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CPZQ66K79 652 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 FIGNL1Q6PIW4 674 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CFAP77Q6ZQR2 320 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PXKQ7Z7A4 578 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 OR13C3Q8NGS6 347 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 HOXB13Q92826 284 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PTERQ96BW5 349 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 AGAP4Q96P64 663 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PHB2Q99623 299 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 INPP5KQ9BT40 448 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 DHRS4Q9BTZ2 278 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 SMG9Q9H0W8 520 aaKnown RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 SPHK2Q9NRA0 654 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 VAPAQ9P0L0 249 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 BTNL2Q9UIR0 455 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 UBE2J1Q9Y385 318 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PCDHGA8Q9Y5G5 932 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ARNTLO00327 626 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 TP53I11O14683 189 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 STC2O76061 302 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 BPIP17213 487 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CD68P34810 354 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PCGF2P35227 344 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 RPS15AP62244 130 aaKnown RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PLCXD2Q0VAA5 305 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 MFSD13AQ14CX5 517 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 HES5Q5TA89 166 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PM20D1Q6GTS8 502 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CPOQ8IVL8 374 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 LMX1AQ8TE12 382 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ZDHHC1Q8WTX9 485 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CAPNS2Q96L46 248 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 TMEM68Q96MH6 324 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 MRI1Q9BV20 369 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 OR51J1Q9H342 316 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 APMAPQ9HDC9 416 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 FANCFQ9NPI8 374 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 BIN3Q9NQY0 253 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CACNG2Q9Y698 323 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 MEIOCA2RUB1 952 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 NPIPA2E9PIF3 369 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 NPIPA3F8WFD2 350 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PEX12O00623 359 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ZNF623O75123 536 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 DNAJB6O75190 326 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CDC123O75794 336 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 TSPAN15O95858 294 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 HRGP04196 525 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ZNF35P13682 527 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 LRP8Q14114 963 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 GRIN2CQ14957 1233 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 C18orf21Q32NC0 220 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PHF19Q5T6S3 580 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 GPR157Q5UAW9 335 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 SLC18B1Q6NT16 456 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 TRIM46Q7Z4K8 759 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ALDH16A1Q8IZ83 802 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 OR5AK2Q8NH90 309 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CHPT1Q8WUD6 406 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 GAB3Q8WWW8 586 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 DAZLQ92904 295 aaKnown RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 KLHDC7BQ96G42 594 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 SLC41A3Q96GZ6 507 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ALG8Q9BVK2 526 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 FZD3Q9NPG1 666 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 COQ3Q9NZJ6 369 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 RIMS3Q9UJD0 308 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 MYH6P13533 1939 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 MYH2Q9UKX2 1941 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 LOC105369274A0A096LPK9 316 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 A0A1B0GVG6 124 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 ZNF840PA6NDX5 716 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 OR5K4A6NMS3 321 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 F5H5P2 479 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 GOSR2O14653 212 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 B4GAT1O43505 415 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 UGDHO60701 494 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 LATS1O95835 1130 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 IFNA10P01566 189 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 RPS17P08708 135 aaKnown RBP7.38□□□□□ -1.23
NEDD9-204ENST00000448183 CDK2P24941 298 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 MAGEA6P43360 314 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 SPINT3P49223 89 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 RNF144AP50876 292 aaPredicted RBP7.38□□□□□ -1.23
NEDD9-204ENST00000448183 RPS21P63220 83 aaKnown RBP7.38□□□□□ -1.23
NEDD9-204ENST00000448183 CLDN10P78369 228 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 GK2Q14410 553 aaPredicted RBP7.38□□□□□ -1.23
NEDD9-204ENST00000448183 PCGF3Q3KNV8 242 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 ZNF789Q5FWF6 425 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 FAM205BPQ63HN1 556 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 METTL2BQ6P1Q9 378 aaKnown RBP7.38□□□□□ -1.23
NEDD9-204ENST00000448183 RNF111Q6ZNA4 994 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 SERPINA11Q86U17 422 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 OR4N4Q8N0Y3 316 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 OR5H2Q8NGV7 314 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 TCTEX1D2Q8WW35 142 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 IGSF21Q96ID5 467 aa7.38□□□□□ -1.23
NEDD9-204ENST00000448183 SAMD8Q96LT4 415 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms