RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ABCB7O75027 752 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 UGT2B11O75310 529 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 IFI6P09912 130 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 RFPL3SP0C7P2 107 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 BGNP21810 368 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 IL12BP29460 328 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 RPL3P39023 403 aaKnown RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 SLC1A6P48664 564 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 MANFP55145 182 aaKnown RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 ADORA2A-AS1P86434 159 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 STX3Q13277 289 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 PDE7AQ13946 482 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 EFR3AQ14156 821 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 ZNHIT3Q15649 155 aaPredicted RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 ZNF385BQ569K4 471 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 C6orf136Q5SQH8 315 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 CES4AQ5XG92 561 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 HIST2H2BCQ6DN03 193 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 SLC30A6Q6NXT4 461 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 TMEM81Q6P7N7 255 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 XKRXQ6PP77 449 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 C3P1Q6ZMU1 363 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 ZNF551Q7Z340 670 aaPredicted RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 OR2L13Q8N349 312 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 ZNF781Q8N8C0 355 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 FNDC5Q8NAU1 212 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 PHF10Q8WUB8 498 aaKnown RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 CIDECQ96AQ7 238 aaPredicted RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 SARAFQ96BY9 339 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 TMEM41AQ96HV5 264 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 NODALQ96S42 347 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 OSBPL11Q9BXB4 747 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 TP63Q9H3D4 680 aaPredicted RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 ZNF395Q9H8N7 513 aaPredicted RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 ACKR4Q9NPB9 350 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 KLRF1Q9NZS2 232 aa13.92□□□□□ -0.18
LIMS3-201ENST00000437679 EIF3LQ9Y262 564 aaKnown RBP13.92□□□□□ -0.18
LIMS3-201ENST00000437679 NCOA6Q14686 2063 aaPredicted RBP13.91□□□□□ -0.18
LIMS3-201ENST00000437679 TMEM120BA0PK00 339 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 PRAMEF25A6NGN4 478 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 TRAPPC6AO75865 159 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 PRPS2P11908 318 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 AGAP20933 346 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 ELAVL4P26378 380 aaKnown RBP13.91□□□□□ -0.18
LIMS3-201ENST00000437679 RPL14P50914 215 aaKnown RBP13.91□□□□□ -0.18
LIMS3-201ENST00000437679 MRPS22P82650 360 aaKnown RBP13.91□□□□□ -0.18
LIMS3-201ENST00000437679 MAD2L1Q13257 205 aaPredicted RBP13.91□□□□□ -0.18
LIMS3-201ENST00000437679 SNTA1Q13424 505 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 ART3Q13508 389 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 PDCD2Q16342 344 aaPredicted RBP13.91□□□□□ -0.18
LIMS3-201ENST00000437679 GXYLT1Q4G148 440 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 IL23RQ5VWK5 629 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 DESI1Q6ICB0 168 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 TMEM211Q6ICI0 200 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 NPSR1Q6W5P4 371 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 LARP4Q71RC2 724 aaKnown RBP eCLIP13.91□□□□□ -0.18
LIMS3-201ENST00000437679 SLC35A4Q96G79 324 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 DMRTA2Q96SC8 542 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 ADOQ96SZ5 270 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 C1orf50Q9BV19 199 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 TMBIM4Q9HC24 238 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 ACSS1Q9NUB1 689 aaPredicted RBP13.91□□□□□ -0.18
LIMS3-201ENST00000437679 ATP6V1HQ9UI12 483 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 ACAD8Q9UKU7 415 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 C15orf41Q9Y2V0 281 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 NCKAP5O14513 1909 aa13.91□□□□□ -0.18
LIMS3-201ENST00000437679 NAV2Q8IVL1 2488 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 TTC36A6NLP5 189 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 FIGNL2A6NMB9 653 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 PRSS44E7EML9 344 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 ADAM10O14672 748 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 GNB5O14775 395 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 SCAMP2O15127 329 aaKnown RBP13.9□□□□□ -0.18
LIMS3-201ENST00000437679 TSPAN2O60636 221 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 ICOSLGO75144 302 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 PSMG1O95456 288 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 COL8A1P27658 744 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 FRKP42685 505 aaPredicted RBP13.9□□□□□ -0.18
LIMS3-201ENST00000437679 PNLIPRP2P54317 469 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 MAGOHP61326 146 aaKnown RBP13.9□□□□□ -0.18
LIMS3-201ENST00000437679 PSG6Q00889 435 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 CASP8Q14790 479 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 TOMM20Q15388 145 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 CYP27C1Q4G0S4 372 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 WLSQ5T9L3 541 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 TIGD3Q6B0B8 471 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 ANGPTL8Q6UXH0 198 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 OR5M9Q8NGP3 310 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 OR1J4Q8NGS1 313 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 CEP70Q8NHQ1 597 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 MGARPQ8TDB4 240 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 PPP1R36Q96LQ0 422 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 GNRHR2Q96P88 292 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 PRPF18Q99633 342 aaKnown RBP13.9□□□□□ -0.18
LIMS3-201ENST00000437679 C20orf27Q9GZN8 174 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 SLC6A15Q9H2J7 730 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 C3orf14Q9HBI5 128 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 Q9N2J8 555 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 PNPLA3Q9NST1 481 aa13.9□□□□□ -0.18
LIMS3-201ENST00000437679 NKIRAS1Q9NYS0 192 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms