RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 OR1F1O43749 312 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 PRICKLE3O43900 615 aaPredicted RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 FCMRO60667 390 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 CH25HO95992 272 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ZGLP1P0C6A0 271 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 KELP23276 732 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 DRD3P35462 400 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 TRIM23P36406 574 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 CLDN2P57739 230 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 CHRNEQ04844 493 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ZFP69Q49AA0 526 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 CLEC12AQ5QGZ9 265 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 PIP5KL1Q5T9C9 394 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 MRM1Q6IN84 353 aaKnown RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 C17orf64Q86WR6 236 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 FBXL6Q8N531 539 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 RAD51AP1Q96B01 352 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ARSGQ96EG1 525 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SLC35G5Q96KT7 338 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 TOX2Q96NM4 488 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 DEPDC7Q96QD5 511 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ARHGDIGQ99819 225 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 TOR4AQ9NXH8 423 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SERGEFQ9UGK8 458 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ENOPH1Q9UHY7 261 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 KLHL20Q9Y2M5 609 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 PRR19A6NJB7 356 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SMLR1H3BR10 107 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 GTPBP1O00178 669 aaKnown RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 UBXN7O94888 489 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ADH5P11766 374 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ACP5P13686 325 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 PRKCAP17252 672 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 PLAURQ03405 335 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 LASP1Q14847 261 aaKnown RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 LTB4RQ15722 352 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 WSCD2Q2TBF2 565 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 HNRNPA1L2Q32P51 320 aaKnown RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 GPAT3Q53EU6 434 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 KRT78Q8N1N4 520 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SIRT6Q8N6T7 355 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 MRPL43Q8N983 215 aaKnown RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 ANKK1Q8NFD2 765 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 OR8K5Q8NH50 307 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 INSM2Q96T92 566 aaPredicted RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 KCNJ15Q99712 375 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SLC35C2Q9NQQ7 365 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 P2RX2Q9UBL9 471 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SLC27A6Q9Y2P4 619 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 GPSM3Q9Y4H4 160 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 IRAK3Q9Y616 596 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 WDFY3Q8IZQ1 3526 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 C2orf92A0A1B0GVN3 265 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 FAM172BPA6NC97 362 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 FABP12A6NFH5 140 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 NOTOA8MTQ0 251 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 MYL12BO14950 172 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SURF4O15260 269 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 EIF2S1P05198 315 aaKnown RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 ADH1AP07327 375 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 GNSP15586 552 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 FGF9P31371 208 aaPredicted RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 RPS5P46782 204 aaKnown RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 SLC9A3P48764 834 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 NCBP2P52298 156 aaKnown RBP eCLIP9.25□□□□□ -0.931e-8■■■□□ 16.9
SS18-203ENST00000415083 PRKAG1P54619 331 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ZNF234Q14588 700 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SNAPC1Q16533 368 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 NDUFA5Q16718 116 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SPDYE7PQ495Y7 208 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ARMC4Q5T2S8 1044 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 SLC30A6Q6NXT4 461 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 TMEM107Q6UX40 140 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 WDR88Q6ZMY6 472 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 GALNT12Q8IXK2 581 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 CCDC116Q8IYX3 515 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 CAMKK1Q8N5S9 505 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 TMIEQ8NEW7 156 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 DIRAS2Q96HU8 199 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ZNF681Q96N22 645 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 HCAR1Q9BXC0 346 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 HDHD5Q9BXW7 423 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 ZCCHC3Q9NUD5 404 aaKnown RBP9.25□□□□□ -0.93
SS18-203ENST00000415083 ATG2BQ96BY7 2078 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CPSF4LA6NMK7 179 aaKnown RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 CENPXA8MT69 81 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 SOCS6O14544 535 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 PRODHO43272 600 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 SLC1A3P43003 542 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CCR8P51685 355 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CDK3Q00526 305 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 MINDY4Q4G0A6 757 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CRTC2Q53ET0 693 aaPredicted RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 KIAA1211LQ6NV74 962 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CNIH2Q6PI25 160 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 KRT73Q86Y46 540 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 VWA5B2Q8N398 1253 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 ASCC1Q8N9N2 400 aaKnown RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 TMEM145Q8NBT3 493 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 UBE2E3Q969T4 207 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms