RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 DCST2Q5T1A1 773 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 ZNF385CQ66K41 422 aaPredicted RBP13.08□□□□□ -0.31
GPNMB-203ENST00000409458 ANKRD34AQ69YU3 496 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 TYW3Q6IPR3 259 aaKnown RBP13.08□□□□□ -0.31
GPNMB-203ENST00000409458 LACC1Q8IV20 430 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 COX18Q8N8Q8 333 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 AGBL5Q8NDL9 886 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 CHDHQ8NE62 594 aaPredicted RBP13.08□□□□□ -0.31
GPNMB-203ENST00000409458 OR4D11Q8NGI4 311 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 GPR151Q8TDV0 419 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 PROX1Q92786 737 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 SDCCAG3Q96C92 435 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 ZNF354BQ96LW1 612 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 WFDC6Q9BQY6 131 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 VN1R1Q9GZP7 353 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 SATB2Q9UPW6 733 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 TESMINQ9Y4I5 508 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 HEMK1Q9Y5R4 338 aaPredicted RBP13.08□□□□□ -0.31
GPNMB-203ENST00000409458 TCRBV16S1A1N1A0A5B0 115 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 GXYLT2A0PJZ3 443 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 A8MUA0 341 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 PRAMEF2O60811 474 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 CBFA2T3O75081 653 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 DNAJB5O75953 348 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 NKX2-2O95096 273 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 IFNW1P05000 195 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 ALPLP05186 524 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 ALPPP05187 535 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 PABPC4LP0CB38 370 aaKnown RBP13.08□□□□□ -0.32
GPNMB-203ENST00000409458 CCL4P13236 92 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 TNNI3P19429 210 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 DNAJA1P31689 397 aaKnown RBP13.08□□□□□ -0.32
GPNMB-203ENST00000409458 GABRA3P34903 492 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 PPP2R2BQ00005 443 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 KCNC4Q03721 635 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 TCF15Q12870 199 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 BIKQ13323 160 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 NKAIN1Q4KMZ8 207 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 NHSL2Q5HYW2 709 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 SHISA6Q6ZSJ9 500 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 LAPTM4BQ86VI4 370 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 CARM1Q86X55 608 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 TMEM151BQ8IW70 566 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 VANGL1Q8TAA9 524 aaPredicted RBP13.08□□□□□ -0.32
GPNMB-203ENST00000409458 PTPMT1Q8WUK0 201 aaPredicted RBP13.08□□□□□ -0.32
GPNMB-203ENST00000409458 ZG16BQ96DA0 208 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 VSTM2LQ96N03 204 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF578Q96N58 590 aaPredicted RBP13.08□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF347Q96SE7 839 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 SDF2Q99470 211 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 SPATA5L1Q9BVQ7 753 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 OSBPL11Q9BXB4 747 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF350Q9GZX5 532 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 GABARAPL1Q9H0R8 117 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 REEP1Q9H902 201 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 SMURF2Q9HAU4 748 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 TMEM9BQ9NQ34 198 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 MKLN1Q9UL63 735 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 MKL2Q9ULH7 1088 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 SAMHD1Q9Y3Z3 626 aaKnown RBP13.08□□□□□ -0.32
GPNMB-203ENST00000409458 ENPP4Q9Y6X5 453 aa13.08□□□□□ -0.32
GPNMB-203ENST00000409458 IGLV3-12A0A075B6K2 115 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 CENPVL1A0A0U1RR11 272 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 M0R3H8 397 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 DENRO43583 198 aaKnown RBP13.07□□□□□ -0.32
GPNMB-203ENST00000409458 HPRP00739 348 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 ITGA2P17301 1181 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 FPR1P21462 350 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 PRKACGP22612 351 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 RORAP35398 523 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 POU6F2P78424 691 aaPredicted RBP13.07□□□□□ -0.32
GPNMB-203ENST00000409458 PSG6Q00889 435 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 SPIBQ01892 262 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 MED21Q13503 144 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 IL11RAQ14626 422 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 NPSR1Q6W5P4 371 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 RBM44Q6ZP01 1051 aaKnown RBP13.07□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF605Q86T29 641 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 VRK2Q86Y07 508 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 HIPK1Q86Z02 1210 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 RBM45Q8IUH3 476 aaKnown RBP13.07□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF321PQ8N8H1 164 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 ZNF615Q8N8J6 731 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 PRSS33Q8NF86 280 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 STT3BQ8TCJ2 826 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 PMEPA1Q969W9 287 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 EPYCQ99645 322 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 OSBPL10Q9BXB5 764 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 PINK1Q9BXM7 581 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 TGIF2Q9GZN2 237 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 OR10A5Q9H207 317 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 Q9H521 79 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 SEMA4GQ9NTN9 838 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 FBXO34Q9NWN3 711 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 SMPD3Q9NY59 655 aaPredicted RBP13.07□□□□□ -0.32
GPNMB-203ENST00000409458 USE1Q9NZ43 259 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 IFT80Q9P2H3 777 aaPredicted RBP13.07□□□□□ -0.32
GPNMB-203ENST00000409458 WDR45Q9Y484 360 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 LYVE1Q9Y5Y7 322 aa13.07□□□□□ -0.32
GPNMB-203ENST00000409458 ADAMDEC1O15204 470 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms