RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 HOXB13Q92826 284 aaPredicted RBP19.94■□□□□ 0.78
CLN3-207ENST00000395653 HGDQ93099 445 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 FAM120BQ96EK7 910 aaKnown RBP19.94■□□□□ 0.78
CLN3-207ENST00000395653 GIMAP5Q96F15 307 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 OR52B2Q96RD2 323 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 TTTY12Q9BZ98 90 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 TSPAN10Q9H1Z9 355 aaPredicted RBP19.94■□□□□ 0.78
CLN3-207ENST00000395653 IL1RL2Q9HB29 575 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 Q9N2J8 555 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 TUBA8Q9NY65 449 aaPredicted RBP19.94■□□□□ 0.78
CLN3-207ENST00000395653 NPIPA1Q9UND3 350 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 OR10H1Q9Y4A9 318 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 E9PBE3 544 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 RNASET2O00584 256 aaKnown RBP19.93■□□□□ 0.78
CLN3-207ENST00000395653 UGT2B11O75310 529 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 GLSO94925 669 aaPredicted RBP19.93■□□□□ 0.78
CLN3-207ENST00000395653 UNC5CO95185 931 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 KRT20P35900 424 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 WNT3P56703 355 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 PLGLB1Q02325 96 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 EIF2S3LQ2VIR3 472 aaKnown RBP19.93■□□□□ 0.78
CLN3-207ENST00000395653 VPS26BQ4G0F5 336 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 ACAD11Q709F0 780 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 SZRD1Q7Z422 152 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 SLC22A16Q86VW1 577 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 CDRT4Q8N9R6 151 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 MOAP1Q96BY2 351 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 COL21A1Q96P44 957 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 DOHHQ9BU89 302 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 ANGPTL4Q9BY76 406 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 EQTNQ9NQ60 294 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 ZCCHC3Q9NUD5 404 aaKnown RBP19.93■□□□□ 0.78
CLN3-207ENST00000395653 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.93■□□□□ 0.78
CLN3-207ENST00000395653 ASNA1O43681 348 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 HS6ST1O60243 411 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 TSPAN2O60636 221 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 REM1O75628 298 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 WISP2O76076 250 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 MAP3K8P41279 467 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 CASP3P42574 277 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 PRKAG1P54619 331 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 UFM1P61960 85 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 MRPS22P82650 360 aaKnown RBP19.93■□□□□ 0.78
CLN3-207ENST00000395653 EFR3AQ14156 821 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 GSTA3Q16772 222 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 PDCD4Q53EL6 469 aaKnown RBP19.93■□□□□ 0.78
CLN3-207ENST00000395653 ANXA8L1Q5VT79 327 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 ZCCHC12Q6PEW1 402 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 OR4N2Q8NGD1 307 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 PRR7Q8TB68 274 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 CXorf36Q9H7Y0 433 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 BOKQ9UMX3 212 aaPredicted RBP19.93■□□□□ 0.78
CLN3-207ENST00000395653 SNX8Q9Y5X2 465 aa19.93■□□□□ 0.78
CLN3-207ENST00000395653 BAHCC1Q9P281 2608 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 UBDO15205 165 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 POLR3GO15318 223 aaPredicted RBP19.92■□□□□ 0.78
CLN3-207ENST00000395653 CFLARO15519 480 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 SCN2BO60939 215 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 TRIM3O75382 744 aaPredicted RBP19.92■□□□□ 0.78
CLN3-207ENST00000395653 NKX2-2O95096 273 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 SNX4O95219 450 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 IL12BP29460 328 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 CCT3P49368 545 aaKnown RBP19.92■□□□□ 0.78
CLN3-207ENST00000395653 PNLIPRP2P54317 469 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 KCNK10P57789 538 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 PPIAP62937 165 aaKnown RBP19.92■□□□□ 0.78
CLN3-207ENST00000395653 HBA1P69905 142 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 GAB1Q13480 694 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 FAM174BQ3ZCQ3 159 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 SPANXN4Q5MJ08 99 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 TMEM198Q66K66 360 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 MFSD12Q6NUT3 480 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 WDR53Q7Z5U6 358 aaPredicted RBP19.92■□□□□ 0.78
CLN3-207ENST00000395653 GHDCQ8N2G8 530 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 GLB1L3Q8NCI6 653 aaPredicted RBP19.92■□□□□ 0.78
CLN3-207ENST00000395653 VPS37AQ8NEZ2 397 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 OR56A1Q8NGH5 318 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 SFXN5Q8TD22 340 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 NTNG2Q96CW9 530 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 TMCO6Q96DC7 493 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 TEX37Q96LM6 180 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 RILPQ96NA2 401 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 NODALQ96S42 347 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 ADOQ96SZ5 270 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 METTL7AQ9H8H3 244 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 ZDHHC11Q9H8X9 412 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 ZFP64Q9NPA5 681 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 TCF7L2Q9NQB0 619 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 CBLCQ9ULV8 474 aa19.92■□□□□ 0.78
CLN3-207ENST00000395653 SVILO95425 2214 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 POLEQ07864 2286 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 ESPL1Q14674 2120 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 PRSS51A0A1B0GVH4 220 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 PRIM2P49643 509 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 IDH3AP50213 366 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 AQP5P55064 265 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 NME5P56597 212 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 PHC1P78364 1004 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 RBPJQ06330 500 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 SNTA1Q13424 505 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms