RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CCDC88CQ9P219 2028 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 RANBP2P49792 3224 aaKnown RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 GLOD5A6NK44 160 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF98A6NK75 572 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 H0YC42 278 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 OR7A10O76100 309 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SOX14O95416 240 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 CSNK2A2P19784 350 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 BUD31P41223 144 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 ILKQ13418 452 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 AGERQ15109 404 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 POMZP3Q6PJE2 187 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 TMEM145Q8NBT3 493 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 MGLLQ99685 303 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SLC17A9Q9BYT1 436 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SLIRPQ9GZT3 109 aaKnown RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 C3orf14Q9HBI5 128 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 EXOSC4Q9NPD3 245 aaKnown RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 LHX9Q9NQ69 397 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SERGEFQ9UGK8 458 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF229Q9UJW7 825 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SNX11Q9Y5W9 270 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 COLEC10Q9Y6Z7 277 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 NINQ8N4C6 2090 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 MYO10Q9HD67 2058 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 A0A0A6YYD5 115 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 FAM172BPA6NC97 362 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 OR52A4PA6NMU1 304 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 FAM227AF5H4B4 570 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 TNNI3P19429 210 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 HTR2BP41595 481 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 PPM1FP49593 454 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 RGS6P49758 472 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 PPP5CP53041 499 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 STXBP1P61764 594 aaKnown RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 PRR5P85299 388 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 DLX2Q07687 328 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 MLF2Q15773 248 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 NDUFA9Q16795 377 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 PLAG1Q6DJT9 500 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 UBE3DQ7Z6J8 389 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 OR56A1Q8NGH5 318 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 OR52E1Q8NGJ3 308 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 OR5D16Q8NGK9 328 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 OR8K5Q8NH50 307 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 AKAP1Q92667 903 aaKnown RBP eCLIP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 MOAP1Q96BY2 351 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 YIPF4Q9BSR8 244 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 MENTQ9BUN1 341 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SNX7Q9UNH6 387 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 RPL36Q9Y3U8 105 aaKnown RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 LAMA3Q16787 3333 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SAGE2PA6NJ88 616 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 A8MV72 311 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SSX5O60225 188 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 HIST1H1TP22492 207 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 AHRP35869 848 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 BCL6P41182 706 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 TNFRSF4P43489 277 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 ETV1P50549 477 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 LASP1Q14847 261 aaKnown RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 TSTQ16762 297 aaKnown RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 UAP1L1Q3KQV9 507 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 LEXMQ3ZCV2 418 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 RRM2BQ7LG56 351 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SLC34A3Q8N130 599 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 MFSD4AQ8N468 514 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 AMER3Q8N944 861 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 SFXN5Q8TD22 340 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 CREB3L4Q8TEY5 395 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 JPH3Q8WXH2 748 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 CEP19Q96LK0 163 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 CDCA4Q9BXL8 241 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 KCNK12Q9HB15 430 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 PAQR5Q9NXK6 330 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 IL20Q9NYY1 176 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 ZFR2Q9UPR6 939 aaKnown RBP9.08□□□□□ -0.96
COL6A3-204ENST00000392003 KLK4Q9Y5K2 254 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 PIAS3Q9Y6X2 628 aa9.08□□□□□ -0.96
COL6A3-204ENST00000392003 H3BQ06 376 aaPredicted RBP9.07□□□□□ -0.96
COL6A3-204ENST00000392003 FFAR1O14842 300 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 PPM1DO15297 605 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 MED26O95402 600 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 CD40LGP29965 261 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 MPIP34949 423 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 TGFBR1P36897 503 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 ADAM15Q13444 863 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 C1DQ13901 141 aaKnown RBP9.07□□□□□ -0.96
COL6A3-204ENST00000392003 Q5BKY6 102 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 MEDAGQ5VYS4 303 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 SLX4IPQ5VYV7 408 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 KIAA1211LQ6NV74 962 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 CCDC116Q8IYX3 515 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 ACOT4Q8N9L9 421 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 OR2L5Q8NG80 312 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 OR8J1Q8NGP2 316 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 LHFPL5Q8TAF8 219 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 SUN3Q8TAQ9 357 aa9.07□□□□□ -0.96
COL6A3-204ENST00000392003 GAS2L1Q99501 681 aaPredicted RBP9.07□□□□□ -0.96
COL6A3-204ENST00000392003 APOOQ9BUR5 198 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms