RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TPRKBQ9Y3C4 175 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 A0A0G2JPF8 293 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 HNRNPCL2B2RXH8 293 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 HNRNPCL3B7ZW38 293 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 SLC1A7O00341 560 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 DYRK3O43781 588 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 MED26O95402 600 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 HNRNPCL4P0DMR1 293 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 IGLV3-21P80748 117 aaPredicted RBP17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 VLDLRP98155 873 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 ID2Q02363 134 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 NEDD8Q15843 81 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 MFSD12Q6NUT3 480 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 C16orf62Q7Z3J2 963 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 TSPYL5Q86VY4 417 aaPredicted RBP17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 SLC44A2Q8IWA5 706 aaPredicted RBP17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 GALNT12Q8IXK2 581 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 SPARTQ8N0X7 666 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 TMEM52Q8NDY8 209 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 CCDC74BQ96LY2 380 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 OR7D2Q96RA2 312 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 YIPF2Q9BWQ6 316 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 SCN3BQ9NY72 215 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 KIF17Q9P2E2 1029 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 FTSJ1Q9UET6 329 aa17.01■□□□□ 0.31
CCDC88C-203ENST00000389856 RP1P56715 2156 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 H3BMQ9 156 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 AK1P00568 194 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 CDK4P11802 303 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 PRKACGP22612 351 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 YAP1P46937 504 aaKnown RBP17■□□□□ 0.31
CCDC88C-203ENST00000389856 STT3AP46977 705 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 GCGRP47871 477 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 DAPP51397 102 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 KCNJ10P78508 379 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 MAT1AQ00266 395 aaKnown RBP17■□□□□ 0.31
CCDC88C-203ENST00000389856 MAP4K2Q12851 820 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 CDK5R2Q13319 367 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 MEP1AQ16819 746 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 PRICKLE4Q2TBC4 344 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 IQCCQ4KMZ1 466 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 GPR107Q5VW38 600 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 XAF1Q6GPH4 301 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 ZNF574Q6ZN55 896 aaPredicted RBP17■□□□□ 0.31
CCDC88C-203ENST00000389856 CYP4Z1Q86W10 505 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 VWA5B2Q8N398 1253 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 CDRT4Q8N9R6 151 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 SPPL2AQ8TCT8 520 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 PROX1Q92786 737 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 TAMM41Q96BW9 452 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 COG8Q96MW5 612 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 TRNT1Q96Q11 434 aaKnown RBP17■□□□□ 0.31
CCDC88C-203ENST00000389856 NODALQ96S42 347 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 PITX2Q99697 317 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 SERHL2Q9H4I8 314 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 GPN2Q9H9Y4 310 aaPredicted RBP17■□□□□ 0.31
CCDC88C-203ENST00000389856 EQTNQ9NQ60 294 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 THSD1Q9NS62 852 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 GIN1Q9NXP7 522 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 MAT2BQ9NZL9 334 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 PDP1Q9P0J1 537 aaPredicted RBP17■□□□□ 0.31
CCDC88C-203ENST00000389856 U3KQV3 271 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 ADAMTS20P59510 1910 aa17■□□□□ 0.31
CCDC88C-203ENST00000389856 A0A1W2PS29 197 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 TTC36A6NLP5 189 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 ALOX5P09917 674 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 ACP1P24666 158 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 CSTF2P33240 577 aaKnown RBP eCLIP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 KCNC4Q03721 635 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 ZNHIT3Q15649 155 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 CTU2Q2VPK5 515 aaKnown RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 GPAT3Q53EU6 434 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 PHF19Q5T6S3 580 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 ARHGAP40Q5TG30 622 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 DBX2Q6ZNG2 339 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 VTCN1Q7Z7D3 282 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 METTL27Q8N6F8 245 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 OR5D16Q8NGK9 328 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 RHBDD1Q8TEB9 315 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 RIT1Q92963 219 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 FKBP10Q96AY3 582 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 STACQ99469 402 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 TREX2Q9BQ50 279 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 ALOXE3Q9BYJ1 711 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 RBCK1Q9BYM8 510 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 RUBCNLQ9H714 662 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 MKKSQ9NPJ1 570 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 KRT84Q9NSB2 600 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 SEC14L3Q9UDX4 400 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 NDRG4Q9ULP0 352 aaKnown RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 GMPPBQ9Y5P6 360 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 R4GN57 208 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 COL5A1P20908 1838 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 D6RAR5 112 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 E9PQ18 207 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 hCG_2039718K7EN88 272 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 IL7RP16871 459 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 IL5RAQ01344 420 aa16.99■□□□□ 0.31
CCDC88C-203ENST00000389856 MVKQ03426 396 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms