RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 FCRL6Q6DN72 434 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 SLC27A4Q6P1M0 643 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 OGFOD3Q6PK18 319 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 KLHL17Q6TDP4 642 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 NUP54Q7Z3B4 507 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 RD3Q7Z3Z2 195 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 C17orf82Q86X59 251 aaPredicted RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 KMT5CQ86Y97 462 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF440Q8IYI8 595 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CSNK1A1LQ8N752 337 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 SMYD1Q8NB12 490 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 OR13H1Q8NG92 308 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 OR6C4Q8NGE1 309 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 OR52P1PQ8NH57 321 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CNIH3Q8TBE1 160 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 PIGXQ8TBF5 258 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 APH1BQ8WW43 257 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 TSACCQ96A04 125 aaPredicted RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CTHRC1Q96CG8 243 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 LGALS12Q96DT0 336 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 TOE1Q96GM8 510 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 ZDHHC12Q96GR4 267 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 TMEM80Q96HE8 168 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF285Q96NJ3 590 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 MND1Q9BWT6 205 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 SLC38A1Q9H2H9 487 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 FN3KQ9H479 309 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 ERVMER34-1Q9H9K5 563 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 REV1Q9UBZ9 1251 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 TESQ9UGI8 421 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 WDR45Q9Y484 360 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 MYOCOSA0A1B0GUC4 107 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ISPDA4D126 451 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 PRAMEF25A6NGN4 478 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 AGAP5A6NIR3 686 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 H0YGG7 62 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 FFAR1O14842 300 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 TRANK1O15050 2925 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 TOX3O15405 576 aaPredicted RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF749O43361 778 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 CHST10O43529 356 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 XPNPEP2O43895 674 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 CTNSO60931 367 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 DIRAS1O95057 198 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 NKX2-2O95096 273 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 NSA2O95478 260 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 RNH1P13489 461 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 NID1P14543 1247 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 AGXTP21549 392 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 RPS4Y1P22090 263 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 AK4P27144 223 aaPredicted RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 POLR2IP36954 125 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 MAP3K8P41279 467 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 GPR3P46089 330 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 YAP1P46937 504 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 AVPR1BP47901 424 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 PCYT1AP49585 367 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 CLK1P49759 484 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 C21orf59P57076 290 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 RAB8AP61006 207 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ARF3P61204 181 aaPredicted RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 IGLV3-21P80748 117 aaPredicted RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 EFNB1P98172 346 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ST3GAL4Q11206 333 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 FZD2Q14332 565 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 GAS6Q14393 721 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 SYPL1Q16563 259 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 TIGD6Q17RP2 521 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 C11orf91Q3C1V1 193 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ANKDD1AQ495B1 522 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 C3orf38Q5JPI3 329 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 PGBD2Q6P3X8 592 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF613Q6PF04 617 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 C19orf48Q6RUI8 117 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 TMEM107Q6UX40 140 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 MBOAT2Q6ZWT7 520 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 CACUL1Q86Y37 369 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 SLITRK4Q8IW52 837 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF619Q8N2I2 560 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 OR7G1Q8NGA0 311 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 OR4K5Q8NGD3 323 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 OR52J3Q8NH60 311 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 WDR36Q8NI36 951 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 TEX47Q8TBZ9 253 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 TBC1D15Q8TC07 691 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 SLC7A13Q8TCU3 470 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ZDHHC1Q8WTX9 485 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 HMGB4Q8WW32 186 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 GGHQ92820 318 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 RAB8BQ92930 207 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 GIMAP5Q96F15 307 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 SPACA7Q96KW9 195 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 BARD1Q99728 777 aaKnown RBP8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 NIPSNAP1Q9BPW8 284 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF559Q9BR84 538 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 JAM3Q9BX67 310 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF350Q9GZX5 532 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 AICDAQ9GZX7 198 aa8.16□□□□□ -1.1
SNRNP40-202ENST00000373720 SLC24A3Q9HC58 644 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms