RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 CTRB1P17538 263 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 AP2S1P53680 142 aaPredicted RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 PER3P56645 1201 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 SRP54P61011 504 aaKnown RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 CNTN1Q12860 1018 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 RPA4Q13156 261 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ADAM15Q13444 863 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 CTRB2Q6GPI1 263 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 NXPE4Q6UWF7 544 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 TEX261Q6UWH6 196 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 SLC36A4Q6YBV0 504 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 TRILQ7L0X0 811 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 KCTD20Q7Z5Y7 419 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ZNF680Q8NEM1 530 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 FBXW5Q969U6 566 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 AIFM2Q9BRQ8 373 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 U3KQ87 197 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 PLPP1O14494 284 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 SHOXO15266 292 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 MMP20O60882 483 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 SMIM11AP58511 58 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 HTRA3P83110 453 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ASTLQ6HA08 431 aaPredicted RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 SLC30A6Q6NXT4 461 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 SLC27A4Q6P1M0 643 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 CD200R1LQ6Q8B3 271 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 COMMD7Q86VX2 200 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 KLBQ86Z14 1044 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 GHDCQ8N2G8 530 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 LRRC17Q8N6Y2 441 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 PLA2G15Q8NCC3 412 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 THAP7Q9BT49 309 aaPredicted RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 SAV1Q9H4B6 383 aaPredicted RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 FGF20Q9NP95 211 aaPredicted RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 NUDT15Q9NV35 164 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ZFR2Q9UPR6 939 aaKnown RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 A0A1W2PRQ8 180 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 HLA-DPB1P04440 258 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ALPPL2P10696 532 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 CXCL3P19876 107 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 XPAP23025 273 aaPredicted RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 NNMTP40261 264 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 CDH11P55287 796 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 POLR2LP62875 67 aaKnown RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 COX10Q12887 443 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 MZT2AQ6P582 158 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ARSKQ6UWY0 536 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 TRMT11Q7Z4G4 463 aaKnown RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 TBC1D19Q8N5T2 526 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ARIH2OSQ8N7S6 290 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 OR11H7Q8NGC8 314 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 TEX47Q8TBZ9 253 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 SPRYD4Q8WW59 207 aaPredicted RBP12.89□□□□□ -0.35
USP49-201ENST00000373006 SORCS1Q8WY21 1168 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 CREB3L1Q96BA8 519 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 TAS2R7Q9NYW3 318 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ACAD8Q9UKU7 415 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 CLEC4AQ9UMR7 237 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 ING4Q9UNL4 249 aa12.89□□□□□ -0.35
USP49-201ENST00000373006 FRMPD3Q5JV73 1810 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 LOC105369274A0A096LPK9 316 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 SGK494L7N484 410 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 EEF1E1O43324 174 aaKnown RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 HRGP04196 525 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 M6PRP20645 277 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 SLC6A1P30531 599 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 RPL35P42766 123 aaKnown RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 GALEQ14376 348 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 METAP1DQ6UB28 335 aaPredicted RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 PRICKLE2Q7Z3G6 844 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 SLC9B2Q86UD5 537 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 OR4N4Q8N0Y3 316 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 ZNF655Q8N720 491 aaPredicted RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 BBS1Q8NFJ9 593 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 SMG7Q92540 1137 aaKnown RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 KLK6Q92876 244 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 TRAF4Q9BUZ4 470 aaPredicted RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 OR51I1Q9H343 314 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 DIABLOQ9NR28 239 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 NRG2O14511 850 aaPredicted RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 LEFTY1O75610 366 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 ABLIM3O94929 683 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 LATS1O95835 1130 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 EPPINO95925 133 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 CTSAP10619 480 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 GABRR2P28476 465 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 ARSIQ5FYB1 569 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 SLC25A30Q5SVS4 291 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 HENMT1Q5T8I9 393 aaKnown RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 C1orf94Q6P1W5 598 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 TMEM91Q6ZNR0 172 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 C11orf96Q7Z7L8 435 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 MORN4Q8NDC4 146 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 OR5P2Q8WZ92 322 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 SMPDL3AQ92484 453 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 GLYATL1Q969I3 302 aa12.88□□□□□ -0.35
USP49-201ENST00000373006 TRMT2BQ96GJ1 504 aaKnown RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 FAM46AQ96IP4 442 aaKnown RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 CPEB1Q9BZB8 566 aaKnown RBP12.88□□□□□ -0.35
USP49-201ENST00000373006 SIRT3Q9NTG7 399 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms