RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ASB12Q8WXK4 309 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 FKBP10Q96AY3 582 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 METTL2AQ96IZ6 378 aaKnown RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 C7orf34Q96L11 122 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ZNF717Q9BY31 904 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 SLC5A7Q9GZV3 580 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 BRF2Q9HAW0 419 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 RDH14Q9HBH5 336 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 A0A1W2PPL8 197 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 WASH4PA8MWX3 477 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 KLF8O95600 359 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 PRDX3P30048 256 aaKnown RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 HSD11B2P80365 405 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 PIN1Q13526 163 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 HAGHLQ6PII5 290 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ARSKQ6UWY0 536 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ELMOD2Q8IZ81 293 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 SPARTQ8N0X7 666 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ZSCAN4Q8NAM6 433 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 CHST14Q8NCH0 376 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ANKK1Q8NFD2 765 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 OR9Q2Q8NGE9 314 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 GPN2Q9H9Y4 310 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 TREX1Q9NSU2 369 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 INTS6Q9UL03 887 aaKnown RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 NOX1Q9Y5S8 564 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 CLEC3AO75596 197 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 SFTPBP07988 381 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 HTR2AP28223 471 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 PCGF2P35227 344 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 CDKN2CP42773 168 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 PRKXP51817 358 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 RIDAP52758 137 aaKnown RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 CLRN1P58418 232 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 BORAQ6PGQ7 559 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 SERPINA11Q86U17 422 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ARHGAP12Q8IWW6 846 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 METTL27Q8N6F8 245 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ELP5Q8TE02 316 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 SMARCD2Q92925 531 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 FAM46AQ96IP4 442 aaKnown RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 SLC6A7Q99884 636 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 DEFB126Q9BYW3 111 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 TMEM185BQ9H7F4 350 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ANKMY1Q9P2S6 941 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 GPR52Q9Y2T5 361 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 C12orf71A8MTZ7 269 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 HEPACAM2A8MVW5 462 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 VSTM5A8MXK1 200 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 RAD51DO75771 328 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 TIMP1P01033 207 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 HEXBP07686 556 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 EN2P19622 333 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 CA5AP35218 305 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 EIF2S3P41091 472 aaKnown RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 C1orf61Q13536 156 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 GK3PQ14409 553 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 CHRFAM7AQ494W8 412 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 PLAG1Q6DJT9 500 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 BEST3Q8N1M1 668 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 TMEM130Q8N3G9 435 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 OR4K13Q8NH42 304 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 SAMD11Q96NU1 681 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 TSNAXQ99598 290 aaKnown RBP10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ZNF559Q9BR84 538 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 NTMT1Q9BV86 223 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 ACTRT3Q9BYD9 372 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 GORASP2Q9H8Y8 452 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 HEBP1Q9NRV9 189 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 KLHL42Q9P2K6 505 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 GMEB2Q9UKD1 530 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 WASF3Q9UPY6 502 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 PCDHGA8Q9Y5G5 932 aa10.85□□□□□ -0.67
PTPRF-203ENST00000372407 H7C417 338 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 IL1RNP18510 177 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 SGCAQ16586 387 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 GARNL3Q5VVW2 1013 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 ALDH16A1Q8IZ83 802 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 Q8N9G6 341 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-203ENST00000372407 SYT14Q8NB59 555 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 WDR20Q8TBZ3 569 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 ADAMTS19Q8TE59 1207 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 CD3GP09693 182 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 CXCR4P61073 352 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 RELAQ04206 551 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 RHEBQ15382 184 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 CDNFQ49AH0 187 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 CCDC58Q4VC31 144 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 WDR45BQ5MNZ6 344 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 RBM12BQ8IXT5 1001 aaKnown RBP10.84□□□□□ -0.67
PTPRF-203ENST00000372407 C12orf76Q8N812 135 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-203ENST00000372407 ATOH8Q96SQ7 321 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 DPCDQ9BVM2 203 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-203ENST00000372407 ENPP5Q9UJA9 477 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 AP1M2Q9Y6Q5 423 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 NPIPB15A6NHN6 443 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-203ENST00000372407 PPP6CO00743 305 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 APOC3P02656 99 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 ACTBP60709 375 aa10.84□□□□□ -0.67
PTPRF-203ENST00000372407 ACTG1P63261 375 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms