RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ANGPT1Q15389 498 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 NPTX1Q15818 432 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 MICAQ29983 383 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 PROX2Q3B8N5 592 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 GPR179Q6PRD1 2367 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 DEF8Q6ZN54 512 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 RABEPKQ7Z6M1 372 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 SLC5A8Q8N695 610 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 ATG16L2Q8NAA4 619 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 CHDHQ8NE62 594 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-202ENST00000372405 OR6T1Q8NGN1 323 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 GIPC3Q8TF64 312 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 MVB12AQ96EY5 273 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 DHRS1Q96LJ7 313 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 FEVQ99581 238 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 SPATA5L1Q9BVQ7 753 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 PINK1Q9BXM7 581 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 LRRN3Q9H3W5 708 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 DUSP22Q9NRW4 184 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 CALML5Q9NZT1 146 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 A4GNTQ9UNA3 340 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 DTX4Q9Y2E6 619 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 GPR55Q9Y2T6 319 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-202ENST00000372405 FAM32AQ9Y421 112 aaKnown RBP12.84□□□□□ -0.35
PTPRF-202ENST00000372405 IGHV5-10-1A0A0J9YXX1 117 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 E9PQ18 207 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 AGRPO00253 132 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 SLC16A6O15403 523 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 GADD45GO95257 159 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 AGR2O95994 175 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 ANKRD34CP0C6C1 535 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 ITGAMP11215 1152 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 CKMT1AP12532 417 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 STT3AP46977 705 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 MAPK10P53779 464 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 RAD23AP54725 363 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 APOFQ13790 326 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 RFX4Q33E94 735 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF311Q5JNZ3 666 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 TTC23Q5W5X9 447 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 TCEAL6Q6IPX3 200 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 ZCCHC12Q6PEW1 402 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 MED25Q71SY5 747 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 GPR135Q8IZ08 494 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 OR10G2Q8NGC3 310 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 OR4D9Q8NGE8 314 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 OR9Q2Q8NGE9 314 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 TCEAL3Q969E4 200 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 RMND5BQ96G75 393 aaPredicted RBP12.83□□□□□ -0.35
PTPRF-202ENST00000372405 RBM18Q96H35 190 aaKnown RBP12.83□□□□□ -0.35
PTPRF-202ENST00000372405 STACQ99469 402 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 GTPBP2Q9BX10 602 aaKnown RBP12.83□□□□□ -0.35
PTPRF-202ENST00000372405 GRIP2Q9C0E4 1043 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF350Q9GZX5 532 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 NMNAT1Q9HAN9 279 aaPredicted RBP12.83□□□□□ -0.35
PTPRF-202ENST00000372405 KRT84Q9NSB2 600 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 SERTAD3Q9UJW9 196 aa12.83□□□□□ -0.35
PTPRF-202ENST00000372405 TRBV4-1A0A0J9YWV2 114 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 LOC100130705A0A1B0GUX0 176 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 GXYLT2A0PJZ3 443 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 CLDN24A6NM45 220 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 DSCR3O14972 297 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 TPST2O60704 377 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 BMP10O95393 424 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 ALPPP05187 535 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 ALOX5P09917 674 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 CYP4B1P13584 511 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 CLK3P49761 638 aaKnown RBP12.83□□□□□ -0.36
PTPRF-202ENST00000372405 PSG6Q00889 435 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 FOXD4Q12950 439 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-202ENST00000372405 PIN1Q13526 163 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-202ENST00000372405 DSG2Q14126 1118 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 DCST2Q5T1A1 773 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF770Q6IQ21 691 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF786Q8N393 782 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 CLIP4Q8N3C7 705 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 IFI44Q8TCB0 444 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 NAT6Q93015 286 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 DGAT2Q96PD7 388 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 NIPSNAP1Q9BPW8 284 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 NDC1Q9BTX1 674 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 RIBC2Q9H4K1 309 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 KIF17Q9P2E2 1029 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 KCNE5Q9UJ90 142 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 SATB2Q9UPW6 733 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 MYRFQ9Y2G1 1151 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 WDR45Q9Y484 360 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 PCDHGA8Q9Y5G5 932 aa12.83□□□□□ -0.36
PTPRF-202ENST00000372405 WDFY3Q8IZQ1 3526 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 KMT2EQ8IZD2 1858 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 TRIM64A6NGJ6 449 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 SYT5O00445 386 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 FRS3O43559 492 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 NKX2-2O95096 273 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 CLPSP04118 112 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 AVPR2P30518 371 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 GABRA3P34903 492 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 HPCAP84074 193 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 IL1RL1Q01638 556 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF155Q12901 538 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms