RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CHRFAM7AQ494W8 412 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 NXPE4Q6UWF7 544 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 ATOH8Q96SQ7 321 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 ZNF701Q9NV72 531 aaPredicted RBP18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 NHSL1Q5SYE7 1610 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 TTC34A8MYJ7 566 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 LEFTY1O75610 366 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 SLC16A8O95907 504 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 IL1AP01583 271 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 PXYLP1Q8TE99 480 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 TRIB2Q92519 343 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 SCLYQ96I15 445 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 SLC5A7Q9GZV3 580 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 SDHAF3Q9NRP4 125 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 TREX1Q9NSU2 369 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 C5AR2Q9P296 337 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 TVP23AA6NH52 213 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 FKTNO75072 461 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 GNMTQ14749 295 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 C2orf27AQ580R0 203 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 CYB561A3Q8NBI2 242 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 PLA2G15Q8NCC3 412 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 GPR150Q8NGU9 434 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 MZB1Q8WU39 189 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 HS6ST2Q96MM7 605 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 SLC12A9Q9BXP2 914 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 ABCG4Q9H172 646 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 ACTL8Q9H568 366 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 IGKV6-21A0A0C4DH24 114 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 VSX2P58304 361 aaPredicted RBP18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 TCTEX1D2Q8WW35 142 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 EGLN2Q96KS0 407 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 DPYSL5Q9BPU6 564 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 KATNBL1Q9H079 304 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 ITGB4P16144 1822 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 PRKCAP17252 672 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 GABRB3P28472 473 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 PRSS3P35030 304 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 CTSOP43234 321 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 KCNC1P48547 511 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 NDUFAF5Q5TEU4 345 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 MLIPQ5VWP3 458 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 ZNF783Q6ZMS7 281 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 OR7G3Q8NG95 312 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 PAAF1Q9BRP4 392 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 C1orf226A1L170 272 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 SEC14L2O76054 403 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 ZNF534Q76KX8 674 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 PCNPQ8WW12 178 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 PGAP3Q96FM1 320 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 C16orf70Q9BSU1 422 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 ZNF226Q9NYT6 803 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 PFKMP08237 780 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 LY6G5CQ5SRR4 150 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 CBLL1Q75N03 491 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 OR6N1Q8NGY5 312 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 DOK4Q8TEW6 326 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 SGTBQ96EQ0 304 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 TDP1Q9NUW8 608 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 RASD1Q9Y272 281 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 PCDHA9Q9Y5H5 950 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 NAP1L6A6NFF2 107 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 TAP2Q03519 686 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 DEFB134Q4QY38 66 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 NKAPLQ5M9Q1 402 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 B3GNT9Q6UX72 402 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 TRAM1L1Q8N609 369 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 ACPTQ9BZG2 426 aa18.53■□□□□ 0.56
CCDC88B-202ENST00000356786 CITO14578 2027 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 A6NL46 340 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 B8ZZF3 427 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 GABARAPO95166 117 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 EIF2DP41214 584 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 GSTM4Q03013 218 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 CDK10Q15131 360 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 SPRYD4Q8WW59 207 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 DNAJA3Q96EY1 480 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 ZDHHC4Q9NPG8 344 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 WASHC1A8K0Z3 465 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 ICMTO60725 284 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 DRD2P14416 443 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 UNC5DQ6UXZ4 953 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 KCTD20Q7Z5Y7 419 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 SERPINA12Q8IW75 414 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 CNTN4Q8IWV2 1026 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 CNTNAP3BQ96NU0 1288 aa18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 TREX2Q9BQ50 279 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-202ENST00000356786 POM121CA8CG34 1229 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 ADORA3P0DMS8 318 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 ADH5P11766 374 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 HLA-EP13747 358 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 ADRB3P13945 408 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 TAS2R38P59533 333 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 RAB40BQ12829 278 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 CLEC14AQ86T13 490 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 DNAJC22Q8N4W6 341 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 LMF1Q96S06 567 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 PCDHGA2Q9Y5H1 932 aa18.52■□□□□ 0.55
CCDC88B-202ENST00000356786 A0A0U1RQS6 177 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms