RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CLYBLQ8N0X4 340 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 OR4N2Q8NGD1 307 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 AGR3Q8TD06 166 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 TWIST2Q8WVJ9 160 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 RND1Q92730 232 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 ZBTB9Q96C00 473 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 TMEM41AQ96HV5 264 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 COL21A1Q96P44 957 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 EML4Q9HC35 981 aaKnown RBP16.8■□□□□ 0.28
CLN3-202ENST00000355477 GALNT9Q9HCQ5 603 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 ALKBH4Q9NXW9 302 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 TAS2R9Q9NYW1 312 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 GIMAP2Q9UG22 337 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 BAIAP2L1Q9UHR4 511 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 OR6C70A6NIJ9 312 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 FIGNL2A6NMB9 653 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 PIP5K1BO14986 540 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 AKAP10O43572 662 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 TSPAN2O60636 221 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 CHEK2O96017 543 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 HPNP05981 417 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 BPGMP07738 259 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 GLI4P10075 376 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 SDC1P18827 310 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 PTPN6P29350 595 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 RPL38P63173 70 aaKnown RBP16.79■□□□□ 0.28
CLN3-202ENST00000355477 KRT71Q3SY84 523 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 GALNTL6Q49A17 601 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 SH2D4BQ5SQS7 431 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 CES4AQ5XG92 561 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 SLC30A6Q6NXT4 461 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 ANGPTL8Q6UXH0 198 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 ACAD11Q709F0 780 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 SLC44A2Q8IWA5 706 aaPredicted RBP16.79■□□□□ 0.28
CLN3-202ENST00000355477 MCEMP1Q8IX19 187 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 DDIASQ8IXT1 998 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 OR1J4Q8NGS1 313 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 OR6Y1Q8NGX8 325 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 LILRB4Q8NHJ6 448 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 ELP4Q96EB1 424 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 TSSK3Q96PN8 268 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 ADOQ96SZ5 270 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 TTYH2Q9BSA4 534 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 UCK2Q9BZX2 261 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 ZDHHC2Q9UIJ5 367 aa16.79■□□□□ 0.28
CLN3-202ENST00000355477 C19orf53Q9UNZ5 99 aaPredicted RBP16.79■□□□□ 0.28
CLN3-202ENST00000355477 A0A087WV62 115 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 UPK1AO00322 258 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 PLOD2O00469 737 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 WDR1O75083 606 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 NEFHP12036 1026 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 CHRNB4P30926 498 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 NTSP30990 170 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 PSG6Q00889 435 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 SNTA1Q13424 505 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 EIPR1Q53HC9 387 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 ZNF385BQ569K4 471 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 C1orf185Q5T7R7 199 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 B3GNT6Q6ZMB0 384 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 ZNF551Q7Z340 670 aaPredicted RBP16.78■□□□□ 0.28
CLN3-202ENST00000355477 WDR53Q7Z5U6 358 aaPredicted RBP16.78■□□□□ 0.28
CLN3-202ENST00000355477 LIX1Q8N485 282 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 WDSUB1Q8N9V3 476 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 CLHC1Q8NHS4 586 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 ASB5Q8WWX0 329 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 CIDECQ96AQ7 238 aaPredicted RBP16.78■□□□□ 0.28
CLN3-202ENST00000355477 SLC35A4Q96G79 324 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 CCT7Q99832 543 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 OSBPL11Q9BXB4 747 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 STMN4Q9H169 189 aaPredicted RBP16.78■□□□□ 0.28
CLN3-202ENST00000355477 KLRF1Q9NZS2 232 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 SLC6A5Q9Y345 797 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 DOCK7Q96N67 2140 aa16.78■□□□□ 0.28
CLN3-202ENST00000355477 C15orf38-AP3S2A0A0A6YYH1 394 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 NKX2-6A6NCS4 301 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 PRAMEF25A6NGN4 478 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 SNPHO15079 494 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 RGS16O15492 202 aaPredicted RBP16.77■□□□□ 0.28
CLN3-202ENST00000355477 PSMG1O95456 288 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 BCKDHAP12694 445 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 COX6B1P14854 86 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 ADH7P40394 386 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 CRYZQ08257 329 aaKnown RBP16.77■□□□□ 0.28
CLN3-202ENST00000355477 ZNF155Q12901 538 aaPredicted RBP16.77■□□□□ 0.28
CLN3-202ENST00000355477 TOMM20Q15388 145 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 LARP4Q71RC2 724 aaKnown RBP eCLIP16.77■□□□□ 0.28
CLN3-202ENST00000355477 EXOC3L1Q86VI1 746 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 OR2L13Q8N349 312 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 OR10Q1Q8NGQ4 319 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 EFHD2Q96C19 240 aaPredicted RBP16.77■□□□□ 0.28
CLN3-202ENST00000355477 PKNOX2Q96KN3 472 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 C3orf30Q96M34 536 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 TIMP4Q99727 224 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 REEP4Q9H6H4 257 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 MAPRE3Q9UPY8 281 aa16.77■□□□□ 0.28
CLN3-202ENST00000355477 CSMD2Q7Z408 3487 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 A0A0G2JNJ9 132 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 KDM4EB2RXH2 506 aaPredicted RBP16.76■□□□□ 0.27
CLN3-202ENST00000355477 PDPK1O15530 556 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 CTIFO43310 598 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms