RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 COQ7Q99807 217 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 CBWD1Q9BRT8 395 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 TTYH2Q9BSA4 534 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ST6GALNAC5Q9BVH7 336 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 GPR174Q9BXC1 333 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 KRT23Q9C075 422 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 NACA2Q9H009 215 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ATG10Q9H0Y0 220 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 HSD3B7Q9H2F3 369 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 LIN28AQ9H9Z2 209 aaKnown RBP2.63□□□□□ -1.99
HMGB1-201ENST00000326004 IL1RL2Q9HB29 575 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 CLEC5AQ9NY25 188 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 TAS2R16Q9NYV7 291 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ACTR3BQ9P1U1 418 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 LHX3Q9UBR4 397 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 MLXQ9UH92 298 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 SH3BGRL2Q9UJC5 107 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 EMCNQ9ULC0 261 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 PIN4Q9Y237 131 aaKnown RBP2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF175Q9Y473 711 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 A2MP01023 1474 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 MYOM1P52179 1685 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ATP7AQ04656 1500 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 MAP3K1Q13233 1512 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 DHX57Q6P158 1386 aaKnown RBP2.62□□□□□ -1.99
HMGB1-201ENST00000326004 PNPLA6Q8IY17 1366 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 DIP2AQ14689 1571 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 REREQ9P2R6 1566 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 RGSL1A5PLK6 1076 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 CFAP73A6NFT4 308 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF487B1APH4 448 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 NDC80O14777 642 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 SSX5O60225 188 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 NUDT14O95848 222 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 GP9P14770 177 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 CCNA2P20248 432 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 BCL3P20749 454 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 UCP1P25874 307 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 MAT2AP31153 395 aaKnown RBP2.62□□□□□ -1.99
HMGB1-201ENST00000326004 BRCC3P46736 316 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 SLC6A8P48029 635 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 NPY2RP49146 381 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ATXN3P54252 364 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-201ENST00000326004 HTD2P86397 168 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 KLHL30Q0D2K2 578 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 GAMTQ14353 236 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 PDK1Q15118 436 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 CLPPQ16740 277 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-201ENST00000326004 CNPY1Q3B7I2 92 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 C14orf28Q4W4Y0 310 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ZCCHC12Q6PEW1 402 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ATRAIDQ6UW56 229 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 MFSD7Q6UXD7 560 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ISLR2Q6UXK2 745 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 STOX1Q6ZVD7 989 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 C1orf186Q6ZWK4 172 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 CEACAM19Q7Z692 300 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 HIPK1Q86Z02 1210 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 PYROXD2Q8N2H3 581 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 LRRC17Q8N6Y2 441 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF491Q8N8L2 437 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ZBTB44Q8NCP5 570 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 CNNM3Q8NE01 707 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 OR52E1Q8NGJ3 308 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 SIRPDQ9H106 197 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ZBP1Q9H171 429 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF446Q9NWS9 450 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 TAS2R3Q9NYW6 316 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.62□□□□□ -1.99
HMGB1-201ENST00000326004 MIOXQ9UGB7 285 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 TBK1Q9UHD2 729 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 CROCCQ5TZA2 2017 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 CAMSAP2Q08AD1 1489 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF518AQ6AHZ1 1483 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 RGPD1P0DJD0 1748 aa2.62□□□□□ -1.99
HMGB1-201ENST00000326004 PARD3Q8TEW0 1356 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 TIAM1Q13009 1591 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ABCA6Q8N139 1617 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 SETD5Q9C0A6 1442 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 IGHV3OR16-12A0A075B7B8 117 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 A0A0U1RRA0 63 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 TMEM89A2RUT3 159 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ERI2A8K979 691 aaKnown RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 K7EPI3 171 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 EI24O14681 340 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 PHF1O43189 567 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 SMPD2O60906 423 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 KBTBD11O94819 623 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 GOT2P00505 430 aaKnown RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 PROS1P07225 676 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 SFNP31947 248 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 MFAP2P55001 183 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 BTG3Q14201 252 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ABRAXAS2Q15018 415 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 TAF7Q15545 349 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF528Q3MIS6 628 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ACSF3Q4G176 576 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 EIPR1Q53HC9 387 aa2.61□□□□□ -1.99
HMGB1-201ENST00000326004 TCHHL1Q5QJ38 904 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-201ENST00000326004 ACER2Q5QJU3 275 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms