RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 AMER2Q8N7J2 671 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 SLC38A9Q8NBW4 561 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 OR9Q2Q8NGE9 314 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 OR6T1Q8NGN1 323 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 CEP76Q8TAP6 659 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 NRBF2Q96F24 287 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 RBM18Q96H35 190 aaKnown RBP17.16■□□□□ 0.34
USP39-201ENST00000323701 SDF2Q99470 211 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 FEVQ99581 238 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 BTBD2Q9BX70 525 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 PIGUQ9H490 435 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 DNAAF2Q9NVR5 837 aaKnown RBP17.16■□□□□ 0.34
USP39-201ENST00000323701 KCND3Q9UK17 655 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 LIPT1Q9Y234 373 aa17.16■□□□□ 0.34
USP39-201ENST00000323701 MRPS33Q9Y291 106 aaKnown RBP17.16■□□□□ 0.34
USP39-201ENST00000323701 TRBV4-1A0A0J9YWV2 114 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 DUXAA6NLW8 204 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 TIAF1O95411 115 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 PABPC4LP0CB38 370 aaKnown RBP17.15■□□□□ 0.34
USP39-201ENST00000323701 ITGA2P17301 1181 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 EMDP50402 254 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 NPTX1Q15818 432 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ATAD3BQ5T9A4 648 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ZAR1Q86SH2 424 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 KMT5CQ86Y97 462 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 GPR135Q8IZ08 494 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 CLIP4Q8N3C7 705 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 IFI44Q8TCB0 444 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ARRDC1-AS1Q9H2J1 176 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 LRRN3Q9H3W5 708 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ZNF696Q9H7X3 374 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 KCNE5Q9UJ90 142 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 CACNA1HO95180 2353 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 CLDN4O14493 209 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 PRKNO60260 465 aaPredicted RBP17.15■□□□□ 0.34
USP39-201ENST00000323701 GDF9O60383 454 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 TPST2O60704 377 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 LGI1O95970 557 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 MSL3P1P0C860 447 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ARHGDIAP52565 204 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 PIN1Q13526 163 aaPredicted RBP17.15■□□□□ 0.34
USP39-201ENST00000323701 MAPK14Q16539 360 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 PROX2Q3B8N5 592 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ARHGAP11BQ3KRB8 267 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 VWA2Q5GFL6 755 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 NIPAL1Q6NVV3 410 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ATG16L2Q8NAA4 619 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 OR4N2Q8NGD1 307 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ATOH1Q92858 354 aaPredicted RBP17.15■□□□□ 0.34
USP39-201ENST00000323701 TSLPQ969D9 159 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 RDH12Q96NR8 316 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 FAM192AQ9GZU8 254 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 NMNAT1Q9HAN9 279 aaPredicted RBP17.15■□□□□ 0.34
USP39-201ENST00000323701 CTPS2Q9NRF8 586 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 PNPLA3Q9NST1 481 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 ETAA1Q9NY74 926 aa17.15■□□□□ 0.34
USP39-201ENST00000323701 NPIPA5A0A0B4J1W7 369 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 NPIPA7E9PJI5 369 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 H3BNH8 94 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 TNFAIP8O95379 198 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 CER1O95813 267 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 NPIPA8P0DM63 369 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 PGDP52209 483 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 HMGA2P52926 109 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 HSD17B7P56937 341 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 HOXC5Q00444 222 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 PSG6Q00889 435 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 GNA13Q14344 377 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 ZNF267Q14586 743 aaPredicted RBP17.14■□□□□ 0.33
USP39-201ENST00000323701 SEC23BQ15437 767 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 LIN52Q52LA3 116 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 ZNF311Q5JNZ3 666 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 PRAMEF8Q5VWM4 474 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 PRAMEF7Q5VXH5 474 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 FIGNL1Q6PIW4 674 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 LAPTM4BQ86VI4 370 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 ZNF786Q8N393 782 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 CDRT4Q8N9R6 151 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 PIK3C3Q8NEB9 887 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 GPR151Q8TDV0 419 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 NIPSNAP1Q9BPW8 284 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 NDC1Q9BTX1 674 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 RIBC2Q9H4K1 309 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 SERTAD3Q9UJW9 196 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 C3orf18Q9UK00 162 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 A4GNTQ9UNA3 340 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 FAM32AQ9Y421 112 aaKnown RBP17.14■□□□□ 0.33
USP39-201ENST00000323701 PCDHGA8Q9Y5G5 932 aa17.14■□□□□ 0.33
USP39-201ENST00000323701 YKT6O15498 198 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 GADD45GO95257 159 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 CKMT1AP12532 417 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 ELK4P28324 431 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 GABRA3P34903 492 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 STT3AP46977 705 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 CLK3P49761 638 aaKnown RBP17.13■□□□□ 0.33
USP39-201ENST00000323701 CDH15P55291 814 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 LSM11P83369 360 aaKnown RBP eCLIP17.13■□□□□ 0.33
USP39-201ENST00000323701 MICAQ29983 383 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 ZNF528Q3MIS6 628 aa17.13■□□□□ 0.33
USP39-201ENST00000323701 DCST2Q5T1A1 773 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms