RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 NUPL2O15504 423 aaKnown RBP13.21□□□□□ -0.29
CSPG4-201ENST00000308508 HOXA10P31260 410 aaPredicted RBP13.21□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF783Q6ZMS7 281 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 UQCC2Q9BRT2 126 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 SLC19A3Q9BZV2 496 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.21□□□□□ -0.29
CSPG4-201ENST00000308508 IL13RA1P78552 427 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 CARD17Q5XLA6 110 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 FAM217AQ8IXS0 508 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 TMEM248Q9NWD8 314 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 GIMAP2Q9UG22 337 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 RPS10-NUDT3A0A1W2PQS6 291 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 RPS10P46783 165 aaKnown RBP13.21□□□□□ -0.29
CSPG4-201ENST00000308508 OR5W2Q8NH69 310 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 ALG8Q9BVK2 526 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 NT5DC2Q9H857 520 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 P2RX6O15547 441 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 SLC2A5P22732 501 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 GBX1Q14549 363 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 NKPD1Q17RQ9 610 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 SLC38A1Q9H2H9 487 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 SYNPO2LQ9H987 977 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 PRTFDC1Q9NRG1 225 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 AIG1Q9NVV5 245 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 PIP5K1CO60331 668 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 CX3CR1P49238 355 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 POU3F4P49335 361 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 GRB7Q14451 532 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.21□□□□□ -0.3
CSPG4-201ENST00000308508 BMFQ96LC9 184 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 LURAP1Q96LR2 239 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 PELOQ9BRX2 385 aaKnown RBP13.21□□□□□ -0.3
CSPG4-201ENST00000308508 CNTNAP3Q9BZ76 1288 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 MINDY3Q9H8M7 445 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 KIF1AQ12756 1690 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 OSMP13725 252 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 RNF4P78317 190 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 GALK2Q01415 458 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 KREMEN2Q8NCW0 462 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 LMF1Q96S06 567 aa13.21□□□□□ -0.3
CSPG4-201ENST00000308508 A6NLC8 198 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 LATO43561 262 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 HLA-EP13747 358 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 PLBD1Q6P4A8 553 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 PTTG3PQ9NZH4 202 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 NID2Q14112 1375 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 CCDC88AQ3V6T2 1871 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 C1orf226A1L170 272 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 FAM163BP0C2L3 166 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 CD1DP15813 335 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 GPR19Q15760 415 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 HIST2H3PS2Q5TEC6 136 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 TMPRSS7Q7RTY8 843 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SPRYD4Q8WW59 207 aaPredicted RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SLAMF9Q96A28 289 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SIGLEC10Q96LC7 697 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 RDH14Q9HBH5 336 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 hCG_1807616A0A1W2PRN6 198 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 K7EPK0 472 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 DUSP11O75319 330 aaKnown RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SYPP08247 313 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 MELKQ14680 651 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 FAM122CQ6P4D5 195 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 C6orf120Q7Z4R8 191 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 FAM71E2Q8N5Q1 922 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 PXDNQ92626 1479 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 MSI2Q96DH6 328 aaKnown RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 PRDM9Q9NQV7 894 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SDHAF2Q9NX18 166 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 B3GNT2Q9NY97 397 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SCAMP2O15127 329 aaKnown RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 ASGR2P07307 311 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 DLX5P56178 289 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 UNC5DQ6UXZ4 953 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 TCEAL2Q9H3H9 227 aaPredicted RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 MST1RQ04912 1400 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 BAZ2AQ9UIF9 1905 aaKnown RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 CRTAPO75718 401 aaPredicted RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 PGCP20142 388 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 FXYD4P59646 89 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 NFATC4Q14934 902 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 MS4A13Q5J8X5 152 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 CPNE8Q86YQ8 564 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF461Q8TAF7 563 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SETD7Q8WTS6 366 aaKnown RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 FOXRED1Q96CU9 486 aaPredicted RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 GGT3PA6NGU5 568 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SERPINE2P07093 398 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 ACVRL1P37023 503 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 RBM39Q14498 530 aaKnown RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 TXNRD3NBQ6F5E7 133 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 TMEM107Q6UX40 140 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 Q6ZVU0 165 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 TRAPPC6BQ86SZ2 158 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 KBTBD6Q86V97 674 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 REM2Q8IYK8 340 aaPredicted RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 GCDHQ92947 438 aaPredicted RBP13.2□□□□□ -0.3
CSPG4-201ENST00000308508 SGCZQ96LD1 299 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 FBRSQ9HAH7 460 aa13.2□□□□□ -0.3
CSPG4-201ENST00000308508 VSTM2BA6NLU5 285 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms