RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ZNF780BQ9Y6R6 833 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 LRRC14BA6NHZ5 514 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 SLC22A20A6NK97 555 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 TMCC2O75069 709 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 REM1O75628 298 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 CBX7O95931 251 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 C2P06681 752 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 PEPDP12955 493 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 DPP4P27487 766 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 UGT2B10P36537 528 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 FEN1P39748 380 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 STARP49675 285 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 EMDP50402 254 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 TRA2BP62995 288 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 GGTA1PQ4G0N0 100 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 MROH9Q5TGP6 573 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 COMMD6Q7Z4G1 85 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 SAMD14Q8IZD0 417 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 CIARTQ8N365 385 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 MEIOBQ8N635 442 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 LRRN4CLQ8ND94 238 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 OR52R1Q8NGF1 315 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 FBF1Q8TES7 1133 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 TMBIM1Q969X1 311 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 KLHL29Q96CT2 875 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 PGM2Q96G03 612 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 SLC35A4Q96G79 324 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 BTBD9Q96Q07 612 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 ELOVL6Q9H5J4 265 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 KLHL28Q9NXS3 571 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 GRHL1Q9NZI5 618 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 EHD3Q9NZN3 535 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 GPR55Q9Y2T6 319 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 PLLPQ9Y342 182 aa13.37□□□□□ -0.27
CCDC88B-201ENST00000301897 KIAA1324LA8MWY0 1029 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 C16orf97H3BN30 126 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 LINC01387J3KSC0 135 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 OR7A17O14581 309 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 SMAD7O15105 426 aaKnown RBP13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 SIX3O95343 332 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 TGM6O95932 706 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 POU2F1P14859 743 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 IL12BP29460 328 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 MAGEA4P43358 317 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 DSCR4P56555 118 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 MRPS25P82663 173 aaKnown RBP13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 IRF9Q00978 393 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 ERCC6LQ2NKX8 1250 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 DESI1Q6ICB0 168 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 OR4K17Q8NGC6 315 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 OR52B6Q8NGF0 335 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 ZNF675Q8TD23 568 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 PERPQ96FX8 193 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 ZNF845Q96IR2 970 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 MDFIQ99750 246 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 KCNF1Q9H3M0 494 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 BRF2Q9HAW0 419 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 FBXL2Q9UKC9 423 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 SLC12A4Q9UP95 1085 aa13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 UTP11Q9Y3A2 253 aaKnown RBP13.36□□□□□ -0.27
CCDC88B-201ENST00000301897 HEATR5AQ86XA9 2040 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 USF3Q68DE3 2245 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 A0A096LPK6 155 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 STX16-NPEPL1H3BU86 382 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 STX16O14662 325 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 SIAH2O43255 324 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 EMC8O43402 210 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 ZIC3O60481 467 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 TNFRSF21O75509 655 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 RBP1P09455 135 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 CD8BP10966 210 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 GRK2P25098 689 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 TYK2P29597 1187 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 KCNJ5P48544 419 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 SERPINB8P50452 374 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 PNLIPRP2P54317 469 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 OCRLQ01968 901 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 GANABQ14697 944 aaKnown RBP13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 TRMT12Q53H54 448 aaKnown RBP13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 ZNF474Q6S9Z5 364 aaPredicted RBP13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 PLEKHM3Q6ZWE6 761 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 LARP4Q71RC2 724 aaKnown RBP eCLIP13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 CXXC5Q7LFL8 322 aaKnown RBP13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 BTLAQ7Z6A9 289 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 MILR1Q7Z6M3 343 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 CCDC25Q86WR0 208 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 PTGR2Q8N8N7 351 aaPredicted RBP13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 GPR78Q96P69 363 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 CDK15Q96Q40 435 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 ADOQ96SZ5 270 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 TRPS1Q9UHF7 1281 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 ZNF175Q9Y473 711 aa13.35□□□□□ -0.27
CCDC88B-201ENST00000301897 TSPAN2O60636 221 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 SMIM24O75264 130 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 OTCP00480 354 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 ALDOAP04075 364 aaKnown RBP13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PAX1P15863 534 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PPP3CBP16298 524 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PCSK2P16519 638 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 KIR2DL2P43627 348 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms