RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 PTERQ96BW5 349 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 FAM163AQ96GL9 167 aaPredicted RBP8.33□□□□□ -1.08
NIPBL-201ENST00000282516 METTL2AQ96IZ6 378 aaKnown RBP8.33□□□□□ -1.08
NIPBL-201ENST00000282516 LRFN5Q96NI6 719 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 CD244Q9BZW8 370 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 KLRG2A4D1S0 409 aaPredicted RBP8.33□□□□□ -1.08
NIPBL-201ENST00000282516 DVL2O14641 736 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 APBB3O95704 486 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 ELK4P28324 431 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 PLEKHS1Q5SXH7 462 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 C22orf39Q6P5X5 142 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 ZNF572Q7Z3I7 529 aaPredicted RBP8.33□□□□□ -1.08
NIPBL-201ENST00000282516 OR10A5Q9H207 317 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 OR10A2Q9H208 303 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 SMOC2Q9H3U7 446 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 B3GNT3Q9Y2A9 372 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 OTOFQ9HC10 1997 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 TIA1P31483 386 aaKnown RBP eCLIP8.33□□□□□ -1.082e-17■■■■■ 41.7
NIPBL-201ENST00000282516 TAS2R46P59540 309 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 FAM110CQ1W6H9 321 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 PDLIM3Q53GG5 364 aaPredicted RBP8.33□□□□□ -1.08
NIPBL-201ENST00000282516 USP51Q70EK9 711 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 OR10Q1Q8NGQ4 319 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 SGK3Q96BR1 496 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 SLC38A1Q9H2H9 487 aa8.33□□□□□ -1.08
NIPBL-201ENST00000282516 A0A1W2PPK0 400 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 KLHL33A6NCF5 533 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 SLC16A5O15375 505 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 DIRAS1O95057 198 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 ITGB5P18084 799 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 RAB3AP20336 220 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 PROZP22891 400 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 APOFQ13790 326 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 GRIN2CQ14957 1233 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 EGFL6Q8IUX8 553 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 OR4N5Q8IXE1 308 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 OR4F6Q8NGB9 312 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 SMAP2Q8WU79 429 aaPredicted RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 CHTF18Q8WVB6 975 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 LRR1Q96L50 414 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 TRIB3Q96RU7 358 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 PLEKHJ1Q9NW61 149 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 DNAJB11Q9UBS4 358 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 CACNG2Q9Y698 323 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 FAM227AF5H4B4 570 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 CDC123O75794 336 aaPredicted RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 HTR3BO95264 441 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 ALDOAP04075 364 aaKnown RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 METTL15P1P0C7V9 234 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 RPL17P18621 184 aaKnown RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 ARL2P36404 184 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 TIGD5Q53EQ6 642 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 FIGNL1Q6PIW4 674 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 METTL27Q8N6F8 245 aaPredicted RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 OR1E3Q8WZA6 343 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 TOMM40LQ969M1 308 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 CERS4Q9HA82 394 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 CCM2LQ9NUG4 571 aaPredicted RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 PCDHB10Q9UN67 800 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 SEC16AO15027 2179 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 TXNL1O43396 289 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 SGCEO43556 437 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 ITM2AO43736 263 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 SIX3O95343 332 aaPredicted RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 SCAPQ12770 1279 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 C4orf17Q53FE4 359 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 DDX1Q92499 740 aaKnown RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 LRIG1Q96JA1 1093 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 OPA3Q9H6K4 179 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 CUTCQ9NTM9 273 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 FAM118AQ9NWS6 357 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 LTN1O94822 1766 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 PTPRMP28827 1452 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 A6NIZ1 184 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 J3KR12 359 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 FANCGO15287 622 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 TGFB1I1O43294 461 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 C4BPAP04003 597 aaKnown RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 GCH1P30793 250 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 RAP1BP61224 184 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 RAP1AP62834 184 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 PRKCZQ05513 592 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 PAN3Q58A45 887 aaKnown RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 CST9LP1Q5W188 147 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 SULF2Q8IWU5 870 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 RAB8BQ92930 207 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 GPR22Q99680 433 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 GPR160Q9UJ42 338 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 GPR34Q9UPC5 381 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 PMM2O15305 246 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 TSPAN6O43657 245 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 DUSP11O75319 330 aaKnown RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 DDNO94850 711 aaPredicted RBP8.32□□□□□ -1.08
NIPBL-201ENST00000282516 FLT3LGP49771 235 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 GDF10P55107 478 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 GK3PQ14409 553 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 FAM69AQ5T7M9 428 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 TSSK4Q6SA08 328 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 OTOP2Q7RTS6 562 aa8.32□□□□□ -1.08
NIPBL-201ENST00000282516 HORMAD2Q8N7B1 307 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms