RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MAMDC2Q7Z304 686 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 GOLGA7Q7Z5G4 137 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 IL22RA1Q8N6P7 574 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 OR5D14Q8NGL3 314 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 DERL2Q9GZP9 239 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 MAGIXQ9H6Y5 334 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 ZDHHC11BP0C7U3 371 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 ATP4BP51164 291 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 MEX3BQ6ZN04 569 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 CHAC2Q8WUX2 184 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF207O43670 478 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 HNRNPH3P31942 346 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 RFC2P35250 354 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 ARSFP54793 590 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 ATP6AP1Q15904 470 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 KLBQ86Z14 1044 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 WDR20Q8TBZ3 569 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 SGTBQ96EQ0 304 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 MSTNO14793 375 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 CNTN5O94779 1100 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 NSA2O95478 260 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 APBB3O95704 486 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 SNRNP70P08621 437 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 GCGRP47871 477 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PAQR3Q6TCH7 311 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 SSX9Q7RTT3 188 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR4Q3Q8NH05 313 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 ADAMTS19Q8TE59 1207 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 FAM173AQ9BQD7 235 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TISP43B9A030 160 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR2T1O43869 369 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 RAB3AP20336 220 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PKLRP30613 574 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 DAP3P51398 398 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 RPS15P62841 145 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 ELOCQ15369 112 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 UNC5DQ6UXZ4 953 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 NUP43Q8NFH3 380 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PCED1BQ96HM7 432 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TEPSINQ96N21 525 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF587Q96SQ5 575 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 LMF2Q9BU23 707 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 CD244Q9BZW8 370 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TAS2R16Q9NYV7 291 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 MMP20O60882 483 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TAS2R46P59540 309 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 DRICH1Q6PGQ1 229 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR4N2Q8NGD1 307 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR6C4Q8NGE1 309 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 C11orf84Q9BUA3 381 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 HCAR1Q9BXC0 346 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 CPNE5Q9HCH3 593 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 USP32Q8NFA0 1604 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PNPP00491 289 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PREPP48147 710 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 SERPINA12Q8IW75 414 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TEX26Q8N6G2 289 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 SLC30A7Q8NEW0 376 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR5P2Q8WZ92 322 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TFGQ92734 400 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 MAF1Q9H063 256 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PLEK2Q9NYT0 353 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 FUOMA2VDF0 154 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 CSKP41240 450 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 MLLT10P55197 1068 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM236Q5W0B7 351 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 RBM12BQ8IXT5 1001 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR8J1Q8NGP2 316 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 LGALS12Q96DT0 336 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 ELMOD3Q96FG2 381 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 LOC105369274A0A096LPK9 316 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 CIDEAO60543 219 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PYCR1P32322 319 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 IRF9Q00978 393 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PRKCZQ05513 592 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TCTE3Q8IZS6 198 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR4N4Q8N0Y3 316 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR10A5Q9H207 317 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR10A2Q9H208 303 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 GOLT1BQ9Y3E0 138 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 FAM155AB1AL88 458 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 B4DXG7 233 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 EFNA3P52797 238 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 CATSPERGQ6ZRH7 1159 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 FCRL5Q96RD9 977 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 ST6GALNAC5Q9BVH7 336 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 RNF32Q9H0A6 362 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 AGPAT2O15120 278 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 NIPSNAP2O75323 286 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 BRCC3P46736 316 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 TPGS2Q68CL5 300 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 OR2T35Q8NGX2 323 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 FOXRED1Q96CU9 486 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PBX4Q9BYU1 374 aa13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 PUS1Q9Y606 427 aaKnown RBP eCLIP13.29□□□□□ -0.28
CCDC88A-201ENST00000263630 JRKO75564 520 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 C2orf27AQ580R0 203 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 VARS2Q5ST30 1063 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 XKR5Q6UX68 686 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms