RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ZNF791Q3KP31 576 aaPredicted RBP9.46□□□□□ -0.89
LIG3-201ENST00000262327 GLYR1Q49A26 553 aaPredicted RBP9.46□□□□□ -0.89
LIG3-201ENST00000262327 MAMSTRQ6ZN01 415 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 ZNF438Q7Z4V0 828 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 FAM129CQ86XR2 697 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 ENKURQ8TC29 256 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 ZFPM2Q8WW38 1151 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 OR5P2Q8WZ92 322 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 SLC7A6Q92536 515 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 ARRDC3Q96B67 414 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 LRRC3BQ96PB8 259 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 UQCC2Q9BRT2 126 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 NARFLQ9H6Q4 476 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 MAN2C1Q9NTJ4 1040 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 AP1M2Q9Y6Q5 423 aa9.46□□□□□ -0.89
LIG3-201ENST00000262327 DOCK9Q9BZ29 2069 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 SCN3AQ9NY46 2000 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 CD8B2A6NJW9 211 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 HRO43593 1189 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 SRPRAP08240 638 aaKnown RBP9.46□□□□□ -0.9
LIG3-201ENST00000262327 CCNYL3P0C7X3 344 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 CD8BP10966 210 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 POU6F2P78424 691 aaPredicted RBP9.46□□□□□ -0.9
LIG3-201ENST00000262327 ELOAQ14241 798 aaKnown RBP9.46□□□□□ -0.9
LIG3-201ENST00000262327 ZNF658BQ4V348 819 aaPredicted RBP9.46□□□□□ -0.9
LIG3-201ENST00000262327 GPAT3Q53EU6 434 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 MEDAGQ5VYS4 303 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 SLC30A6Q6NXT4 461 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 SYCE2Q6PIF2 218 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 CCDC116Q8IYX3 515 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 KRT78Q8N1N4 520 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 TP53I13Q8NBR0 393 aaPredicted RBP9.46□□□□□ -0.9
LIG3-201ENST00000262327 OR8D4Q8NGM9 314 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 FAM46AQ96IP4 442 aaKnown RBP9.46□□□□□ -0.9
LIG3-201ENST00000262327 KCTD7Q96MP8 289 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 ZNF607Q96SK3 696 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 LGR4Q9BXB1 951 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 SLC22A4Q9H015 551 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 GLIPR2Q9H4G4 154 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 KLHL31Q9H511 634 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 A4GALTQ9NPC4 353 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 NLKQ9UBE8 527 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 GPR55Q9Y2T6 319 aaPredicted RBP9.46□□□□□ -0.9
LIG3-201ENST00000262327 NOTCH4Q99466 2003 aa9.46□□□□□ -0.9
LIG3-201ENST00000262327 ATG2BQ96BY7 2078 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 HEATR5BQ9P2D3 2071 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.45□□□□□ -0.9
LIG3-201ENST00000262327 SHISA3A0PJX4 238 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 GSAPA4D1B5 854 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SLC2A10O95528 541 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 CHRM4P08173 479 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 ACADLP28330 430 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 AVPR1BP47901 424 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SLC6A11P48066 632 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 NCBP2P52298 156 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIG3-201ENST00000262327 DUSP2Q05923 314 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIG3-201ENST00000262327 PCDH1Q08174 1060 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 CNIH2Q6PI25 160 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 PRICKLE2Q7Z3G6 844 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 C12orf76Q8N812 135 aaPredicted RBP9.45□□□□□ -0.9
LIG3-201ENST00000262327 RASSF5Q8WWW0 418 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 JPH3Q8WXH2 748 aaPredicted RBP9.45□□□□□ -0.9
LIG3-201ENST00000262327 WDR34Q96EX3 536 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SLC35G5Q96KT7 338 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 TEFMQ96QE5 360 aaKnown RBP9.45□□□□□ -0.9
LIG3-201ENST00000262327 TBX5Q99593 518 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 DPH7Q9BTV6 452 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 MS4A8Q9BY19 250 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SAP130Q9H0E3 1048 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 OSGEPL1Q9H4B0 414 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 ATG2AQ2TAZ0 1938 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 HMX3A6NHT5 357 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 FAM183AA6NL82 134 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 PRRT4C9JH25 899 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 PGRMC2O15173 223 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 NR2F6P10588 404 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 FOSL1P15407 271 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 CELP19835 753 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 DDOSTP39656 456 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 WNT4P56705 351 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 IL18Q14116 193 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 TOR1AIP1Q5JTV8 583 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 TMEM201Q5SNT2 666 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 DDI2Q5TDH0 399 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 DGLUCYQ7Z3D6 616 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 KLHDC8AQ8IYD2 350 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 BBS1Q8NFJ9 593 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 RAD51AP1Q96B01 352 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 MTERF3Q96E29 417 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 COQ10AQ96MF6 247 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 FRMD6Q96NE9 622 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 AHSPQ9NZD4 102 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 MARK1Q9P0L2 795 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 ATPIF1Q9UII2 106 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 GRIP1Q9Y3R0 1128 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SZT2Q5T011 3432 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 A0A087WUU8 490 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 LOC102723532A0A0G2JNH3 316 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 ZC3H12DA2A288 527 aaKnown RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms