RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FABP5Q01469 135 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 CSTF1Q05048 431 aaKnown RBP20.03■□□□□ 0.8
TRIM28-201ENST00000253024 DMPKQ09013 629 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 LRRC32Q14392 662 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 P2RY14Q15391 338 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 TANGO2Q6ICL3 276 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 VITQ6UXI7 678 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 FAM92BQ6ZTR7 304 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 GALNT12Q8IXK2 581 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 OR52E1Q8NGJ3 308 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 TEX47Q8TBZ9 253 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 CAMK1GQ96NX5 476 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 MIXL1Q9H2W2 232 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 MARK1Q9P0L2 795 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF232Q9UNY5 417 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 CMAHPQ9Y471 501 aa20.03■□□□□ 0.8
TRIM28-201ENST00000253024 C17orf113A0A1B0GUU1 675 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 BTN3A3O00478 584 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 VEGFDO43915 354 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 SIM1P81133 766 aaPredicted RBP20.02■□□□□ 0.8
TRIM28-201ENST00000253024 PCDH1Q08174 1060 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 SRSF5Q13243 272 aaKnown RBP20.02■□□□□ 0.8
TRIM28-201ENST00000253024 LINC00299Q6ZSB3 139 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 C16orf62Q7Z3J2 963 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 NRMQ8IXM6 262 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 SLC16A11Q8NCK7 471 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 TMEM255BQ8WV15 326 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 C11orf54Q9H0W9 315 aaPredicted RBP20.02■□□□□ 0.8
TRIM28-201ENST00000253024 H0Y8X5 98 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 EML2O95834 649 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 CXCR2P25025 360 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 PSPHP78330 225 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 REEP5Q00765 189 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 GPR68Q15743 365 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 GAB4Q2WGN9 574 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 TUBA3EQ6PEY2 450 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 ZC3H14Q6PJT7 736 aaKnown RBP20.02■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF614Q8N883 585 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 CCL4L1Q8NHW4 92 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 SUN3Q8TAQ9 357 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 RANGRFQ9HD47 186 aaPredicted RBP20.02■□□□□ 0.8
TRIM28-201ENST00000253024 SEC14L4Q9UDX3 406 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 ENOPH1Q9UHY7 261 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 CLCA2Q9UQC9 943 aa20.02■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF670-ZNF695F2Z2N8 137 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 HPGDSO60760 199 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 RAB36O95755 333 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 DDX6P26196 483 aaKnown RBP eCLIP20.01■□□□□ 0.798e-9■■□□□ 13.5
TRIM28-201ENST00000253024 MAPK9P45984 424 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 RHAGQ02094 409 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 BBS10Q8TAM1 723 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 ANKHQ9HCJ1 492 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 SLC6A20Q9NP91 592 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 ENTPD4Q9Y227 616 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 SMLR1H3BR10 107 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 SOCS6O14544 535 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 PCSK2P16519 638 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 AHRP35869 848 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 HTR3AP46098 478 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 PDX1P52945 283 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 SNRPGP62308 76 aaKnown RBP20.01■□□□□ 0.79
TRIM28-201ENST00000253024 ANKK1Q8NFD2 765 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 PIK3R3Q92569 461 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 CD93Q9NPY3 652 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 HYKKA2RU49 373 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 MRPL3P09001 348 aaKnown RBP20.01■□□□□ 0.79
TRIM28-201ENST00000253024 NR2F6P10588 404 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 TRIM23P36406 574 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 PRDX1Q06830 199 aaKnown RBP20.01■□□□□ 0.79
TRIM28-201ENST00000253024 ZNF557Q8N988 423 aaPredicted RBP20.01■□□□□ 0.79
TRIM28-201ENST00000253024 NUP43Q8NFH3 380 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 OR51G2Q8NGK0 314 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 CREB3L4Q8TEY5 395 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 OR7D2Q96RA2 312 aa20.01■□□□□ 0.79
TRIM28-201ENST00000253024 SHISA3A0PJX4 238 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 MAN2B1O00754 1011 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 GNB5O14775 395 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 ASGR2P07307 311 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 CCNYL3P0C7X3 344 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 MTNR1AP48039 350 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 RGS8P57771 180 aaPredicted RBP20■□□□□ 0.79
TRIM28-201ENST00000253024 NCF4Q15080 339 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 KLHL12Q53G59 568 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 FAM111BQ6SJ93 734 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 MORN4Q8NDC4 146 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 LINC00615Q96LM1 132 aaPredicted RBP20■□□□□ 0.79
TRIM28-201ENST00000253024 KXD1Q9BQD3 176 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 NDUFB11Q9NX14 153 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 PAQR5Q9NXK6 330 aaPredicted RBP20■□□□□ 0.79
TRIM28-201ENST00000253024 APOBEC3BQ9UH17 382 aaKnown RBP20■□□□□ 0.79
TRIM28-201ENST00000253024 A0A1W2PPK0 400 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 C1QTNF3-AMACRE9PGA6 284 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 SEMA3DO95025 777 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 DDX5P17844 614 aaKnown RBP20■□□□□ 0.79
TRIM28-201ENST00000253024 HIST1H1TP22492 207 aaPredicted RBP20■□□□□ 0.79
TRIM28-201ENST00000253024 CDH11P55287 796 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 FAM27D1Q5T7N8 215 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 TMIEQ8NEW7 156 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 PROKR2Q8NFJ6 384 aa20■□□□□ 0.79
TRIM28-201ENST00000253024 OR10G6Q8NH81 332 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms