RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 FRRS1Q6ZNA5 592 aa16.91■□□□□ 0.3
VIM-201ENST00000224237 QSOX2Q6ZRP7 698 aa16.91■□□□□ 0.3
VIM-201ENST00000224237 COX18Q8N8Q8 333 aa16.91■□□□□ 0.3
VIM-201ENST00000224237 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.91■□□□□ 0.3
VIM-201ENST00000224237 HOXB13Q92826 284 aaPredicted RBP16.91■□□□□ 0.3
VIM-201ENST00000224237 BARD1Q99728 777 aaKnown RBP16.91■□□□□ 0.3
VIM-201ENST00000224237 SLC7A5P2Q9GIP4 190 aa16.91■□□□□ 0.3
VIM-201ENST00000224237 WDR45Q9Y484 360 aa16.91■□□□□ 0.3
VIM-201ENST00000224237 PCDHGB2Q9Y5G2 931 aa16.91■□□□□ 0.3
VIM-201ENST00000224237 LNP1A1A4G5 178 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 J3KTA2 159 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 LINGO3P0C6S8 592 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 IGFBP5P24593 272 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 CDH12P55289 794 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 ZNF155Q12901 538 aaPredicted RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 ZNF311Q5JNZ3 666 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 ARHGAP40Q5TG30 622 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 KDM4DQ6B0I6 523 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 RHBDD2Q6NTF9 364 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 PTCHD1Q96NR3 888 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 OR6C1Q96RD1 312 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 QRSL1Q9H0R6 528 aaKnown RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 TOR3AQ9H497 397 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 CACYBPQ9HB71 228 aaKnown RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 NECTIN3Q9NQS3 549 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 PNPLA3Q9NST1 481 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 KIF17Q9P2E2 1029 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 TMEFF2Q9UIK5 374 aaPredicted RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 KCND3Q9UK17 655 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 PCDHGB5Q9Y5G0 923 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 OR2W5A6NFC9 320 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 SYT5O00445 386 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 HYAL3O43820 417 aaPredicted RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 PRAMEF2O60811 474 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 TNFAIP8O95379 198 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 LGI1O95970 557 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 IFNA16P05015 189 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 GNAO1P09471 354 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 ZNHIT3Q15649 155 aaPredicted RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 ZIK1Q3SY52 487 aaPredicted RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 DCST2Q5T1A1 773 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 TYW3Q6IPR3 259 aaKnown RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 CYP4Z1Q86W10 505 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 OR4C15Q8NGM1 316 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 GPR151Q8TDV0 419 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 FBXL20Q96IG2 436 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 CNDP2Q96KP4 475 aaKnown RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 SDF2Q99470 211 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 ZNF350Q9GZX5 532 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 MTHFD2LQ9H903 347 aaPredicted RBP16.9■□□□□ 0.3
VIM-201ENST00000224237 RARRES3Q9UL19 164 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 NUP210LQ5VU65 1888 aa16.9■□□□□ 0.3
VIM-201ENST00000224237 D6RAR5 112 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 FCMRO60667 390 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 NKX2-2O95096 273 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 GADD45GO95257 159 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 ZIC2O95409 532 aaPredicted RBP16.89■□□□□ 0.29
VIM-201ENST00000224237 PRKAR1BP31321 381 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 DAPP51397 102 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 HMGA2P52926 109 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 DUSP8Q13202 625 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 ZNF267Q14586 743 aaPredicted RBP16.89■□□□□ 0.29
VIM-201ENST00000224237 PLA2G2CQ5R387 149 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 MFSD4BQ5TF39 518 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 C1orf189Q5VU69 101 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 TTC23Q5W5X9 447 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 ANKRD34AQ69YU3 496 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 TCTN3Q6NUS6 607 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 DBX2Q6ZNG2 339 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 USP51Q70EK9 711 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 SLITRK4Q8IW52 837 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 ATG16L2Q8NAA4 619 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 ZNF555Q8NEP9 628 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 VANGL1Q8TAA9 524 aaPredicted RBP16.89■□□□□ 0.29
VIM-201ENST00000224237 ATOH1Q92858 354 aaPredicted RBP16.89■□□□□ 0.29
VIM-201ENST00000224237 LMF2Q9BU23 707 aaKnown RBP16.89■□□□□ 0.29
VIM-201ENST00000224237 SOX17Q9H6I2 414 aaPredicted RBP16.89■□□□□ 0.29
VIM-201ENST00000224237 MKKSQ9NPJ1 570 aaPredicted RBP16.89■□□□□ 0.29
VIM-201ENST00000224237 SLC13A4Q9UKG4 626 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 IFT52Q9Y366 437 aa16.89■□□□□ 0.29
VIM-201ENST00000224237 HEMK1Q9Y5R4 338 aaPredicted RBP16.89■□□□□ 0.29
VIM-201ENST00000224237 NTN3O00634 580 aaPredicted RBP16.88■□□□□ 0.29
VIM-201ENST00000224237 STX11O75558 287 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 CDH2P19022 906 aaPredicted RBP16.88■□□□□ 0.29
VIM-201ENST00000224237 SSTR4P31391 388 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 EMDP50402 254 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 MYBPC1Q00872 1141 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 FUT7Q11130 342 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 GANABQ14697 944 aaKnown RBP16.88■□□□□ 0.29
VIM-201ENST00000224237 MINDY4Q4G0A6 757 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 FAHD1Q6P587 224 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 DEF8Q6ZN54 512 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 PEX5LQ8IYB4 626 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 OR4D11Q8NGI4 311 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 OR52P1PQ8NH57 321 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 OR52J3Q8NH60 311 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 GIPC3Q8TF64 312 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 PHF10Q8WUB8 498 aaKnown RBP16.88■□□□□ 0.29
VIM-201ENST00000224237 PIK3R3Q92569 461 aa16.88■□□□□ 0.29
VIM-201ENST00000224237 CNPPD1Q9BV87 410 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms