RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TMEM175Q9BSA9 504 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HDAC8Q9BY41 377 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RAB1BQ9H0U4 201 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GAR1Q9NY12 217 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MARCH2Q9P0N8 246 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 NEXMIFQ5QGS0 1516 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SMIM35A0A1B0GVV1 85 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 KIAA0513O60268 411 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FADS1O60427 444 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LCKP06239 509 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FBLP22087 321 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CERS1P27544 350 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FMO3P31513 532 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CAMLGP49069 296 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HERVK_113P63132 956 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 EXT1Q16394 746 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SPANXN3Q5MJ09 141 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SLC30A6Q6NXT4 461 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FMR1NBQ8N0W7 255 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TP53I13Q8NBR0 393 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 EDEM1Q92611 657 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ITPKCQ96DU7 683 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PHF21BQ96EK2 531 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 C8orf48Q96LL4 319 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TWNKQ96RR1 684 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DHRS9Q9BPW9 319 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DPCDQ9BVM2 203 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TMPRSS4Q9NRS4 437 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CCDC167Q9P0B6 97 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ZFR2Q9UPR6 939 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 EDDM13A0A1B0GTR0 161 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 OR2M5A3KFT3 312 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 AP1G1O43747 822 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CYTIPO60759 359 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF821O75541 412 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 AGFG2O95081 481 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LSM8O95777 96 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 IDO1P14902 403 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CTHP32929 405 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SSR2P43308 183 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 KCNJ1P48048 391 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HERV-K104P61576 105 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GNB2P62879 340 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 AESQ08117 197 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GK3PQ14409 553 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CLEC12BQ2HXU8 276 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 NADSYN1Q6IA69 706 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TANGO2Q6ICL3 276 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UNC5DQ6UXZ4 953 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 AMZ2Q86W34 360 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 KCNMB4Q86W47 210 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CERS5Q8N5B7 392 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LINC00116Q8NCU8 138 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 NUP43Q8NFH3 380 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DEDD2Q8WXF8 326 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 APH1AQ96BI3 265 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SARAFQ96BY9 339 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SGIP1Q9BQI5 828 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RHBGQ9H310 441 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SLC7A7Q9UM01 511 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MAGEB17A8MXT2 336 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CST8O60676 142 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RFPL2O75678 378 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CSF2P04141 144 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 IFNW1P05000 195 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 H2AFB1P0C5Y9 115 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UBCP0CG48 685 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 POU3F3P20264 500 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ACVRL1P37023 503 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MAP3K8P41279 467 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HTR3AP46098 478 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TKTL1P51854 596 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LBX1P52954 281 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PRSS12P56730 875 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 KIAA1024LP59773 190 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RAET1LQ5VY80 246 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF627Q7L945 461 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SPPL2CQ8IUH8 684 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 OR4A16Q8NH70 328 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MITD1Q8WV92 249 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 APIPQ96GX9 242 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF764Q96H86 408 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FAM46AQ96IP4 442 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DDOQ99489 341 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FUCA2Q9BTY2 467 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UCK2Q9BZX2 261 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 B3GNT4Q9C0J1 378 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 C1orf198Q9H425 327 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ITM2CQ9NQX7 267 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GSKIPQ9P0R6 139 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GRHPRQ9UBQ7 328 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ADAM28Q9UKQ2 775 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 POMT2Q9UKY4 750 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 KCNMB2Q9Y691 235 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 VWDEQ8N2E2 1590 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LRRN3E7EW58 273 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PRAMEF26H0Y7S4 382 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SMAD9O15198 467 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PSMD10O75832 226 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LYPLA2O95372 231 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms