RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ICA1LQ8NDH6 482 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 SENP5Q96HI0 755 aaPredicted RBP18.72■□□□□ 0.59
CLN3-250ENST00000636839 PISDQ9UG56 409 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 RPS6KA6Q9UK32 745 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 ABCG2Q9UNQ0 655 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 GXYLT2A0PJZ3 443 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 SEMG1P04279 462 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 FASP25445 335 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 VLDLRP98155 873 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 OCA2Q04671 838 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 CHRNEQ04844 493 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 INTS11Q5TA45 600 aaKnown RBP18.71■□□□□ 0.59
CLN3-250ENST00000636839 COMTD1Q86VU5 262 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 OR4N2Q8NGD1 307 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 COL21A1Q96P44 957 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 WFDC6Q9BQY6 131 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 TGIF2Q9GZN2 237 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 B4E171 279 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 CASQ2O14958 399 aaPredicted RBP18.71■□□□□ 0.59
CLN3-250ENST00000636839 MFN2O95140 757 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 HBQ1P09105 142 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 GABRA3P34903 492 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 VHLP40337 213 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 MAP3K8P41279 467 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 TSPAN7P41732 249 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 IST1P53990 364 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 FUT7Q11130 342 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 ZNF155Q12901 538 aaPredicted RBP18.71■□□□□ 0.59
CLN3-250ENST00000636839 NNATQ16517 81 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 HES3Q5TGS1 186 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 IRAK1BP1Q5VVH5 260 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 TSEN54Q7Z6J9 526 aaKnown RBP18.71■□□□□ 0.59
CLN3-250ENST00000636839 GALNT6Q8NCL4 622 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 CIB1Q99828 191 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 DOHHQ9BU89 302 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 OR8D2Q9GZM6 311 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 OR10A5Q9H207 317 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 NTN4Q9HB63 628 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 FOLH1BQ9HBA9 442 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 ADPRHL2Q9NX46 363 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 THUMPD1Q9NXG2 353 aaKnown RBP18.71■□□□□ 0.59
CLN3-250ENST00000636839 GIN1Q9NXP7 522 aa18.71■□□□□ 0.59
CLN3-250ENST00000636839 SAC3D1A6NKF1 404 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 IDSB3KWA1 339 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 ASNA1O43681 348 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 SLITRK5O94991 958 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 PSG6Q00889 435 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 OGFRL1Q5TC84 451 aaPredicted RBP18.7■□□□□ 0.58
CLN3-250ENST00000636839 HEPHL1Q6MZM0 1159 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 ASCL5Q7RTU5 278 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 C16orf62Q7Z3J2 963 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 ZNF615Q8N8J6 731 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 GPR32P1Q8NGA4 272 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 C16orf52Q8NHV5 167 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 GPR151Q8TDV0 419 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 STRADBQ9C0K7 418 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 SLC38A1Q9H2H9 487 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 MKLN1Q9UL63 735 aa18.7■□□□□ 0.58
CLN3-250ENST00000636839 HEMK1Q9Y5R4 338 aaPredicted RBP18.7■□□□□ 0.58
CLN3-250ENST00000636839 DDAH2O95865 285 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 CRISP3P54108 245 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 ATP6AP1Q15904 470 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 GRAMD1BQ3KR37 738 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 SFT2D3Q587I9 215 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 FIGNL1Q6PIW4 674 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 ZDHHC21Q8IVQ6 265 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 CDRT4Q8N9R6 151 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 VSTM2LQ96N03 204 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 SPSB2Q99619 263 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 PIGUQ9H490 435 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 SH3GLB1Q9Y371 365 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 MAGED1Q9Y5V3 778 aaPredicted RBP18.69■□□□□ 0.58
CLN3-250ENST00000636839 CLCA3PQ9Y6N3 262 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 NUP210LQ5VU65 1888 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 KNTC1P50748 2209 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 TMEM247A6NEH6 219 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 VSTM2BA6NLU5 285 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 PDLIM1O00151 329 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 CLOCKO15516 846 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 ONECUT2O95948 504 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 ALOX5P09917 674 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 CD247P20963 164 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 RNF144AP50876 292 aaPredicted RBP18.69■□□□□ 0.58
CLN3-250ENST00000636839 IQCCQ4KMZ1 466 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 NPSR1Q6W5P4 371 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 PATL1Q86TB9 770 aaKnown RBP18.69■□□□□ 0.58
CLN3-250ENST00000636839 EPHX4Q8IUS5 362 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 PLPP5Q8NEB5 264 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 SPPL2AQ8TCT8 520 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 MR1Q95460 341 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 C7orf34Q96L11 122 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 SLC29A1Q99808 456 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 MAGIXQ9H6Y5 334 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 IL1RAPQ9NPH3 570 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 AKAP7Q9P0M2 348 aaPredicted RBP18.69■□□□□ 0.58
CLN3-250ENST00000636839 PCDHGA1Q9Y5H4 931 aa18.69■□□□□ 0.58
CLN3-250ENST00000636839 CENPVL1A0A0U1RR11 272 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 DUXAA6NLW8 204 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 HEXBP07686 556 aa18.68■□□□□ 0.58
CLN3-250ENST00000636839 FUT4P22083 530 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms