RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 FAM120CQ9NX05 1096 aaKnown RBP18.72■□□□□ 0.59
PTCD3-220ENST00000627371 KLF13Q9Y2Y9 288 aaPredicted RBP18.72■□□□□ 0.59
PTCD3-220ENST00000627371 NPFFR2Q9Y5X5 522 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 PRSS51A0A1B0GVH4 220 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 CAPN14A8MX76 684 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 C9JVG2 144 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 SLC22A3O75751 556 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 TROVE2P10155 538 aaKnown RBP eCLIP18.71■□□□□ 0.59
PTCD3-220ENST00000627371 CORO7P57737 925 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 STX1BP61266 288 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 HBA1P69905 142 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 PSPHP78330 225 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 PRR5P85299 388 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 PSG6Q00889 435 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 TLE1Q04724 770 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 INPP5JQ15735 1006 aaPredicted RBP18.71■□□□□ 0.59
PTCD3-220ENST00000627371 NPSR1Q6W5P4 371 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 SZRD1Q7Z422 152 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 ZNF605Q86T29 641 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 PRR22Q8IZ63 422 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 CLECL1Q8IZS7 167 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 CISD2Q8N5K1 135 aaKnown RBP18.71■□□□□ 0.59
PTCD3-220ENST00000627371 VPS37AQ8NEZ2 397 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 CPT1CQ8TCG5 803 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 SNRNP40Q96DI7 357 aaKnown RBP18.71■□□□□ 0.59
PTCD3-220ENST00000627371 GIMAP5Q96F15 307 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 LMF2Q9BU23 707 aaKnown RBP18.71■□□□□ 0.59
PTCD3-220ENST00000627371 CXorf36Q9H7Y0 433 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 SH2D2AQ9NP31 389 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 SNX8Q9Y5X2 465 aa18.71■□□□□ 0.59
PTCD3-220ENST00000627371 NINQ8N4C6 2090 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 A0A0G2JND7 137 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 TTC36A6NLP5 189 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 CFLARO15519 480 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 RASAL1O95294 804 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 PGRP06401 933 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 ABCB1P08183 1280 aaPredicted RBP18.7■□□□□ 0.58
PTCD3-220ENST00000627371 NAGAP17050 411 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 IRX1P78414 480 aaPredicted RBP18.7■□□□□ 0.58
PTCD3-220ENST00000627371 PLCXD2Q0VAA5 305 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 ZNHIT3Q15649 155 aaPredicted RBP18.7■□□□□ 0.58
PTCD3-220ENST00000627371 CGB2Q6NT52 195 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 ANKRD46Q86W74 232 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 SLC34A3Q8N130 599 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 FAM98AQ8NCA5 519 aaKnown RBP18.7■□□□□ 0.58
PTCD3-220ENST00000627371 SFXN5Q8TD22 340 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 HOXB13Q92826 284 aaPredicted RBP18.7■□□□□ 0.58
PTCD3-220ENST00000627371 MOAP1Q96BY2 351 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 ZNF317Q96PQ6 595 aaPredicted RBP18.7■□□□□ 0.58
PTCD3-220ENST00000627371 TAAR6Q96RI8 345 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 TRIM4Q9C037 500 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 EQTNQ9NQ60 294 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 ZCCHC3Q9NUD5 404 aaKnown RBP18.7■□□□□ 0.58
PTCD3-220ENST00000627371 MAP10Q9P2G4 905 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 NTNG1Q9Y2I2 539 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 SVILO95425 2214 aa18.7■□□□□ 0.58
PTCD3-220ENST00000627371 ASPDHA6ND91 283 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 PPM1BO75688 479 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 IL6P05231 212 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 ZFP36L2P47974 494 aaKnown RBP18.69■□□□□ 0.58
PTCD3-220ENST00000627371 CCT3P49368 545 aaKnown RBP18.69■□□□□ 0.58
PTCD3-220ENST00000627371 ATP4BP51164 291 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 DGKQP52824 942 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 PRKAG1P54619 331 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 ZCCHC12Q6PEW1 402 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 PAOXQ6QHF9 649 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 FAM180AQ6UWF9 173 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 SLC44A2Q8IWA5 706 aaPredicted RBP18.69■□□□□ 0.58
PTCD3-220ENST00000627371 CDRT4Q8N9R6 151 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 FAM13CQ8NE31 585 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 OR10G3Q8NGC4 313 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 OR56A1Q8NGH5 318 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 OR4A15Q8NGL6 344 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 OR9I1Q8NGQ6 314 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 PAQR8Q8TEZ7 354 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 OMA1Q96E52 524 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 BARD1Q99728 777 aaKnown RBP18.69■□□□□ 0.58
PTCD3-220ENST00000627371 SACM1LQ9NTJ5 587 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 BTNL2Q9UIR0 455 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 PCDHGB4Q9UN71 923 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 COPG1Q9Y678 874 aaKnown RBP18.69■□□□□ 0.58
PTCD3-220ENST00000627371 CHCHD2Q9Y6H1 151 aaPredicted RBP18.69■□□□□ 0.58
PTCD3-220ENST00000627371 NBASA2RRP1 2371 aa18.69■□□□□ 0.58
PTCD3-220ENST00000627371 KLRC4-KLRK1H3BQV0 150 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 CCL3P10147 92 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 SOAT1P35610 550 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 MAP3K8P41279 467 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 POLR2JP52435 117 aaKnown RBP18.68■□□□□ 0.58
PTCD3-220ENST00000627371 FBXW4P57775 412 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 LRRC74AQ0VAA2 488 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 SPDYE7PQ495Y7 208 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 MFSD12Q6NUT3 480 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 WDR53Q7Z5U6 358 aaPredicted RBP18.68■□□□□ 0.58
PTCD3-220ENST00000627371 SULF2Q8IWU5 870 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 FBXW8Q8N3Y1 598 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 BCORP1Q8N888 145 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 GRHL3Q8TE85 626 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 TMBIM1Q969X1 311 aa18.68■□□□□ 0.58
PTCD3-220ENST00000627371 RILPQ96NA2 401 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms