RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SCML1Q9UN30 329 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 GUCY1B2O75343 617 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 APBB3O95704 486 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 IGHV4-34P06331 123 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 ADORA3P0DMS8 318 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 CKMT1AP12532 417 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 DDX5P17844 614 aaKnown RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 MMP11P24347 488 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 CLK1P49759 484 aaKnown RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 RPS3AP61247 264 aaKnown RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 RPS15AP62244 130 aaKnown RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 ATP1A4Q13733 1029 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 CLPPQ16740 277 aaPredicted RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 C16orf62Q7Z3J2 963 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 TAF8Q7Z7C8 310 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 DEPDC4Q8N2C3 294 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 TMEM52Q8NDY8 209 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 SRFBP1Q8NEF9 429 aaKnown RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 OR4K5Q8NGD3 323 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 CDS1Q92903 461 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 MYDGFQ969H8 173 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 SLC35A4Q96G79 324 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 ITPAQ9BY32 194 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 RBCK1Q9BYM8 510 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 OR51E2Q9H255 320 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 CNIH4Q9P003 139 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 CPNE7Q9UBL6 633 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 IL20RAQ9UHF4 553 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 PAIP2BQ9ULR5 123 aaKnown RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 CHST2Q9Y4C5 530 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 ASXL3Q9C0F0 2248 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 CENPVL1A0A0U1RR11 272 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 SH3PXD2BA1X283 911 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 EFCAB9A8MZ26 197 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 H0YGG7 62 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 TLR4O00206 839 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 EMC8O43402 210 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 KDM1AO60341 852 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 OSMP13725 252 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 AKT2P31751 481 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 TRHRP34981 398 aaPredicted RBP9.96□□□□□ -0.81
CUX1-221ENST00000622516 RFX3P48380 749 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 ARF3P61204 181 aaPredicted RBP9.96□□□□□ -0.81
CUX1-221ENST00000622516 MRPS21P82921 87 aaKnown RBP9.96□□□□□ -0.81
CUX1-221ENST00000622516 TGM3Q08188 693 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 NR1D2Q14995 579 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 TMCO5AQ8N6Q1 288 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 DENND6BQ8NEG7 585 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 SLC37A2Q8TED4 501 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 C10orf90Q96M02 699 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 SLC38A1Q9H2H9 487 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 EGLN3Q9H6Z9 239 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 ADAP2Q9NPF8 381 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 KCMF1Q9P0J7 381 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 CLEC2DQ9UHP7 191 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 CELSR3Q9NYQ7 3312 aa9.96□□□□□ -0.81
CUX1-221ENST00000622516 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 NPIPA5A0A0B4J1W7 369 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 OR2W5A6NFC9 320 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 NPIPA7E9PJI5 369 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 TLX2O43763 284 aaPredicted RBP9.96□□□□□ -0.82
CUX1-221ENST00000622516 AIREO43918 545 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 LGI1O95970 557 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 NPIPA8P0DM63 369 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 MAN2A2P49641 1150 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 UGT2B15P54855 530 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 CCINQ13939 588 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 CLEC12AQ5QGZ9 265 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 ADCK1Q86TW2 530 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 TRIM69Q86WT6 500 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 ZBTB8BQ8NAP8 495 aaPredicted RBP9.96□□□□□ -0.82
CUX1-221ENST00000622516 FNDC8Q8TC99 324 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 ADAMTS15Q8TE58 950 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 GAL3ST3Q96A11 431 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 CLIP3Q96DZ5 547 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 GIMAP5Q96F15 307 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 SH3YL1Q96HL8 342 aaPredicted RBP9.96□□□□□ -0.82
CUX1-221ENST00000622516 CHCHD6Q9BRQ6 235 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 SARGQ9BW04 601 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 PLA2G12AQ9BZM1 189 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 C3orf14Q9HBI5 128 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 SLC9A8Q9Y2E8 581 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 HNRNPCP07910 306 aaKnown RBP eCLIP9.96□□□□□ -0.827e-7■■□□□ 13.7
CUX1-221ENST00000622516 NDUFS1P28331 727 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 GSTM5P46439 218 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 PPM1FP49593 454 aaPredicted RBP9.96□□□□□ -0.82
CUX1-221ENST00000622516 VSX2P58304 361 aaPredicted RBP9.96□□□□□ -0.82
CUX1-221ENST00000622516 TAS2R41P59536 307 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 CCDC85BQ15834 202 aaPredicted RBP9.96□□□□□ -0.82
CUX1-221ENST00000622516 ARMCX4Q5H9R4 360 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 UBE2UQ5VVX9 321 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 BHLHB9Q6PI77 547 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 ZC3H14Q6PJT7 736 aaKnown RBP9.96□□□□□ -0.82
CUX1-221ENST00000622516 PAQR6Q6TCH4 344 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 FAM46DQ8NEK8 389 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 OR56A1Q8NGH5 318 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 RSC1A1Q92681 617 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 BORCS5Q969J3 196 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 ZHX1-C8orf76Q96EF9 292 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms